Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13227.1 | CDX72718 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDX90305 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDY12116 | AT4G39050.1 | 21798944 |
| AT3G13227.1 | CDY22394 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82548 | Canola | nucleus | 83.64 | 79.31 |
| CDY66552 | Canola | nucleus | 83.64 | 79.31 |
| AT3G13227.1 | Thale cress | cytosol | 78.18 | 77.48 |
Protein Annotations
| EnsemblPlants:CDY70591 | EnsemblPlantsGene:GSBRNA2T00004616001 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF29 | ProteinID:CDY70591 | ProteinID:CDY70591.1 |
| SEG:seg | UniParc:UPI0004EAF1E2 | UniProt:A0A078JYJ9 | MapMan:35.2 | : | : |
Description
BnaCnng68960DBnaCnng68960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYJ9]
Coordinates
chrLK042619:+:2411..2743
Molecular Weight (calculated)
11960.4 Da
IEP (calculated)
10.677
GRAVY (calculated)
-0.889
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEKEKEE AKRTMIMKIN KLKETPQEIS QEDAKRQEAY NMSPRVRGGS GSAGMGKSSS VRLNCLCAPT THPGSFRCRY HRRNSALGMS RGISVPSNLS
101: MLGGGGSPKS
101: MLGGGGSPKS
001: MEGKEEEAKR RMMMKIKLKE TEADVSQDDI KRQEAYNMSP RVRRGGGGGG GSVGMSKSSS VRQNCLCAPT THPGSFRCRY HRRNAGLGMS RGTSVPSNLS
101: MLAGGDSNSP K
101: MLAGGDSNSP K
Arabidopsis Description
At3g13227 [Source:UniProtKB/TrEMBL;Acc:Q9LHL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.