Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001494.1-P | Field mustard | nucleus | 81.98 | 78.45 |
| CDX82548 | Canola | nucleus | 81.98 | 78.45 |
| CDY66552 | Canola | nucleus | 81.98 | 78.45 |
| CDY70591 | Canola | cytosol | 77.48 | 78.18 |
Protein Annotations
| ArrayExpress:AT3G13227 | EMBL:AK117927 | EMBL:BT004704 | EnsemblPlants:AT3G13227.1 | EnsemblPlantsGene:AT3G13227 | EntrezGene:820516 |
| GO:GO:0005575 | GO:GO:0008150 | PANTHER:PTHR33132 | PANTHER:PTHR33132:SF29 | ProteinID:AEE75316.1 | ProteinID:BAB03121.1 |
| ProteinID:OAP02972.1 | RefSeq:AT3G13227 | RefSeq:AT3G13227-TAIR-G | RefSeq:NP_683560.1 | SEG:seg | TAIR:AT3G13227 |
| TAIR:AT3G13227.1 | UniParc:UPI000000C43A | UniProt:A0A178VDK1 | UniProt:Q9LHL1 | MapMan:35.2 | : |
Description
At3g13227 [Source:UniProtKB/TrEMBL;Acc:Q9LHL1]
Coordinates
chr3:+:4257882..4258648
Molecular Weight (calculated)
12023.4 Da
IEP (calculated)
10.648
GRAVY (calculated)
-0.932
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEEEAKR RMMMKIKLKE TEADVSQDDI KRQEAYNMSP RVRRGGGGGG GSVGMSKSSS VRQNCLCAPT THPGSFRCRY HRRNAGLGMS RGTSVPSNLS
101: MLAGGDSNSP K
101: MLAGGDSNSP K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.