Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr1P21120_001 | |
GSMUA_Achr3P21890_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G60630.1 | GSMUA_Achr3P21890_001 | AT1G72030.1 | 21798944 |
AT4G00150.1 | GSMUA_Achr1P21120_001 | AT1G60490.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P36740_001 | Banana | cytosol | 65.34 | 72.33 |
VIT_02s0154g00400.t01 | Wine grape | cytosol | 45.08 | 46.48 |
Bra014479.1-P | Field mustard | cytosol, peroxisome, plastid | 15.34 | 44.51 |
Solyc08g078800.1.1 | Tomato | plastid | 39.2 | 43.67 |
GSMUA_Achr11P... | Banana | cytosol | 47.92 | 42.52 |
GSMUA_Achr8P11160_001 | Banana | cytosol | 50.0 | 39.58 |
GSMUA_Achr5P20860_001 | Banana | cytosol | 41.48 | 39.53 |
Bra003311.1-P | Field mustard | nucleus | 34.85 | 36.36 |
GSMUA_Achr11P... | Banana | cytosol | 47.35 | 36.13 |
AT4G00150.1 | Thale cress | cytosol, plastid | 36.93 | 34.95 |
Bra037319.1-P | Field mustard | cytosol, plastid | 35.61 | 33.45 |
CDY63061 | Canola | cytosol, plastid | 35.61 | 33.45 |
CDY63062 | Canola | cytosol, plastid | 35.61 | 33.45 |
CDX95633 | Canola | cytosol | 34.66 | 33.03 |
VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 48.3 | 32.9 |
CDX83398 | Canola | cytosol | 35.04 | 31.36 |
CDY56248 | Canola | cytosol | 35.42 | 31.11 |
CDX89065 | Canola | nucleus | 32.39 | 31.09 |
CDY67934 | Canola | cytosol | 35.04 | 30.94 |
PGSC0003DMT400012104 | Potato | plastid | 40.72 | 30.71 |
Bra000375.1-P | Field mustard | cytosol | 35.23 | 30.64 |
Solyc01g090950.2.1 | Tomato | cytosol | 44.51 | 30.56 |
PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 44.32 | 30.47 |
CDY48367 | Canola | cytosol | 31.63 | 29.61 |
AT2G45160.1 | Thale cress | cytosol | 35.61 | 29.38 |
KRH75351 | Soybean | cytosol | 40.91 | 29.03 |
KRG88927 | Soybean | cytosol | 40.91 | 28.99 |
AT3G60630.1 | Thale cress | cytosol | 34.09 | 28.89 |
KRH76167 | Soybean | cytosol | 39.39 | 28.22 |
KRH65380 | Soybean | cytosol | 37.88 | 27.32 |
GSMUA_Achr3P29970_001 | Banana | cytosol | 27.46 | 27.31 |
GSMUA_Achr4P07190_001 | Banana | plastid | 25.76 | 26.05 |
GSMUA_Achr4P03460_001 | Banana | cytosol, plastid | 25.57 | 25.28 |
GSMUA_Achr1P26740_001 | Banana | cytosol | 21.02 | 20.98 |
Protein Annotations
EnsemblPlants:GSMUA_Achr1P05940_001 | EnsemblPlants:GSMUA_Achr1T05940_001 | EnsemblPlantsGene:GSMUA_Achr1G05940_001 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
PANTHER:PTHR31636 | PANTHER:PTHR31636:SF52 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000296877A |
UniProt:M0RXF2 | MapMan:15.5.12 | : | : | : | : |
Description
Putative Scarecrow-like protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05940_001]
Coordinates
chr1:-:4835472..4837298
Molecular Weight (calculated)
58012.9 Da
IEP (calculated)
8.429
GRAVY (calculated)
-0.017
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVLSAGV LGSKGATFGC TPSLAPRPAN SLPLSLPPLP PGVISQESTE EKPLFGSSLF FAHQQQAQPP QRSSFFLPLN HFAGYHEGQP LEHLAPPPRK
101: RPAIDPLPSS HVPDLFLRRN QPQQLGLPQQ FNTAAFQLQP APGKPKLANG DEASVAARQQ RELVDQLFKA AEVLEAGNTV SARGILARLN HQFPSPVGKP
201: FLRSAFYFKE ALHLLASHSP HPHPPPSLPI STPLDVMLKL GAYKTFSDVS PIVQFASFTC IQPLLEALDG ASRIHIIDFD IGVGMQWSAF MQELAQRWSS
301: SMATAPFLKI TAFASAYSHH SLELNLIHQN LSHFASSLNI PFEFNVLSLD PFDPTVLFRM CSAMDEAVAV NLPIGSAIRP PIPTLLRFVK QLSPKIVVSV
401: DYGCDRIDLP FAHHILHAFQ SCTVLLDSID AAGANQDAAN KIERFLVRPR IESAVLGRHH LSDKTLPWRT LFASAGFMHV QFSNFTETQA ECLLKRVLVR
501: GFHVEKRQSS LSLCWQRGEL VSVSAWKC
101: RPAIDPLPSS HVPDLFLRRN QPQQLGLPQQ FNTAAFQLQP APGKPKLANG DEASVAARQQ RELVDQLFKA AEVLEAGNTV SARGILARLN HQFPSPVGKP
201: FLRSAFYFKE ALHLLASHSP HPHPPPSLPI STPLDVMLKL GAYKTFSDVS PIVQFASFTC IQPLLEALDG ASRIHIIDFD IGVGMQWSAF MQELAQRWSS
301: SMATAPFLKI TAFASAYSHH SLELNLIHQN LSHFASSLNI PFEFNVLSLD PFDPTVLFRM CSAMDEAVAV NLPIGSAIRP PIPTLLRFVK QLSPKIVVSV
401: DYGCDRIDLP FAHHILHAFQ SCTVLLDSID AAGANQDAAN KIERFLVRPR IESAVLGRHH LSDKTLPWRT LFASAGFMHV QFSNFTETQA ECLLKRVLVR
501: GFHVEKRQSS LSLCWQRGEL VSVSAWKC
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.