Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00150.1 | CDY47220 | AT1G60490.1 | 21798944 |
| AT4G00150.1 | CDY53049 | AT1G60490.1 | 21798944 |
| AT4G00150.1 | CDY30759 | AT5G66720.1 | 21798944 |
| AT4G00150.1 | CDY53852 | AT5G66720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037319.1-P | Field mustard | cytosol, plastid | 99.82 | 99.82 |
| CDY63061 | Canola | cytosol, plastid | 99.82 | 99.82 |
| AT4G00150.1 | Thale cress | cytosol, plastid | 74.38 | 74.91 |
| Zm00001d022034_P001 | Maize | cytosol | 24.38 | 44.77 |
| CDX95633 | Canola | cytosol | 42.53 | 43.14 |
| CDY67934 | Canola | cytosol | 43.42 | 40.8 |
| CDY56248 | Canola | cytosol | 42.7 | 39.93 |
| CDX83398 | Canola | cytosol | 41.81 | 39.83 |
| CDX89065 | Canola | nucleus | 38.97 | 39.82 |
| Os10t0551200-01 | Rice | cytosol | 27.94 | 39.45 |
| CDY48367 | Canola | cytosol | 39.15 | 39.01 |
| VIT_15s0048g00270.t01 | Wine grape | extracellular, golgi, mitochondrion, nucleus | 53.2 | 38.58 |
| KRH76167 | Soybean | cytosol | 50.18 | 38.26 |
| PGSC0003DMT400066799 | Potato | cytosol, nucleus, vacuole | 52.14 | 38.15 |
| KRH65380 | Soybean | cytosol | 49.47 | 37.98 |
| KRH75351 | Soybean | cytosol | 50.18 | 37.9 |
| Solyc01g090950.2.1 | Tomato | cytosol | 51.78 | 37.84 |
| GSMUA_Achr5P20860_001 | Banana | cytosol | 36.48 | 37.0 |
| KRG88927 | Soybean | cytosol | 48.93 | 36.91 |
| GSMUA_Achr6P36740_001 | Banana | cytosol | 30.78 | 36.27 |
| GSMUA_Achr11P... | Banana | cytosol | 38.08 | 35.97 |
| GSMUA_Achr1P05940_001 | Banana | plastid | 33.45 | 35.61 |
| Zm00001d045589_P001 | Maize | cytosol | 31.49 | 35.4 |
| EER87695 | Sorghum | cytosol, plastid | 31.32 | 34.31 |
| Zm00001d035873_P001 | Maize | cytosol, plastid | 17.26 | 33.92 |
| Os06t0105350-00 | Rice | plastid | 29.18 | 33.54 |
| GSMUA_Achr8P11160_001 | Banana | cytosol | 38.79 | 32.68 |
| Zm00001d047957_P001 | Maize | cytosol | 7.47 | 32.56 |
| Zm00001d027292_P001 | Maize | peroxisome | 27.76 | 32.43 |
| TraesCS7D01G011400.1 | Wheat | plastid | 30.25 | 31.95 |
| TraesCS1D01G212800.1 | Wheat | cytosol | 34.52 | 31.24 |
| TraesCS1A01G209400.1 | Wheat | mitochondrion, plastid | 34.7 | 31.2 |
| HORVU1Hr1G053510.1 | Barley | plastid | 34.34 | 31.13 |
| TraesCS1B01G223400.1 | Wheat | cytosol, plastid | 34.52 | 31.09 |
| Os03t0103400-01 | Rice | cytosol | 26.16 | 31.01 |
| TraesCS4A01G482000.1 | Wheat | plastid | 29.89 | 30.94 |
| GSMUA_Achr11P... | Banana | cytosol | 37.9 | 30.78 |
| EER91968 | Sorghum | cytosol, mitochondrion | 34.16 | 30.0 |
| TraesCS6D01G229400.1 | Wheat | mitochondrion | 37.72 | 29.99 |
| TraesCS6A01G247200.1 | Wheat | mitochondrion | 37.54 | 29.97 |
| TraesCS6B01G277400.1 | Wheat | mitochondrion | 37.19 | 29.86 |
| HORVU6Hr1G063650.1 | Barley | cytosol, mitochondrion, nucleus, plasma membrane | 37.01 | 29.59 |
| Os02t0662700-01 | Rice | cytosol | 37.19 | 29.48 |
| Zm00001d042852_P001 | Maize | cytosol | 12.81 | 29.27 |
| TraesCS7A01G014200.1 | Wheat | plastid | 30.25 | 29.26 |
| Zm00001d029855_P001 | Maize | mitochondrion | 33.45 | 29.15 |
| Os02t0663100-01 | Rice | cytosol | 37.01 | 29.09 |
| Zm00001d002718_P001 | Maize | cytosol | 37.19 | 28.99 |
| EES11245 | Sorghum | cytosol, nucleus, peroxisome | 37.01 | 28.89 |
| Zm00001d026158_P001 | Maize | cytosol | 36.83 | 28.83 |
| Os04t0555000-01 | Rice | cytosol | 36.12 | 28.55 |
| TraesCS5A01G535000.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 32.21 | 28.41 |
| Zm00001d051387_P001 | Maize | cytosol | 35.77 | 28.39 |
| CDY43895 | Canola | cytosol | 24.73 | 28.31 |
| CDY13032 | Canola | cytosol | 24.73 | 28.19 |
| TraesCS4D01G360200.1 | Wheat | cytosol | 32.21 | 28.19 |
| TraesCS4B01G367300.1 | Wheat | cytosol | 32.21 | 28.19 |
| Zm00001d027569_P001 | Maize | plastid | 15.48 | 27.8 |
| EES05768 | Sorghum | cytosol | 35.41 | 27.79 |
| CDX72597 | Canola | cytosol | 22.78 | 27.77 |
| CDX75590 | Canola | cytosol | 23.67 | 27.31 |
| Zm00001d018956_P001 | Maize | plastid | 6.94 | 27.27 |
| Zm00001d022162_P001 | Maize | cytosol | 8.01 | 27.27 |
| HORVU4Hr1G087700.2 | Barley | cytosol, mitochondrion, peroxisome, plastid | 30.96 | 27.27 |
| CDX69238 | Canola | cytosol | 23.67 | 27.2 |
| Zm00001d017513_P001 | Maize | cytosol, mitochondrion, nucleus | 33.99 | 27.05 |
| Zm00001d031615_P001 | Maize | cytosol | 12.46 | 25.74 |
| Zm00001d002023_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 14.95 | 23.73 |
| OQU85680 | Sorghum | mitochondrion | 24.56 | 21.33 |
| CDY45672 | Canola | cytosol | 17.08 | 19.63 |
| CDY17336 | Canola | cytosol | 17.08 | 19.24 |
Protein Annotations
| EnsemblPlants:CDY63062 | EnsemblPlantsGene:GSBRNA2T00037888001 | GO:A0A078JEC4 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF11 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY63062 | ProteinID:CDY63062.1 |
| SEG:seg | UniParc:UPI0004EED40E | UniProt:A0A078JEC4 | MapMan:15.5.12 | : | : |
Description
BnaAnng18550DBnaAnng18550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEC4]
Coordinates
chrLK034239:+:20805..22668
Molecular Weight (calculated)
61784.3 Da
IEP (calculated)
6.262
GRAVY (calculated)
-0.138
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLPFAEFQG KVISSYFSSD IEPTSVLSPL TTSSSTVSSS HGVNAAVGGG GISTAISGGD EQCGASDWER VLPASPTHDH DHDNDQSILR LIMMGDSQDP
101: SLELNNILQT SQSPATFHHS DYTSLGSFGV VVDTTTGFGG LDHSVPALFQ SQVPPQHPVL INQSQTHFTQ NPSLLYGHQI PAAKRLNQGG SVGEGMITEQ
201: LLKVAEVMER GGETSVAQGI LARLNQQLSS PVGKAFERAA FYYIEALHNS LLHNNKASQT PLNPYSLIFK ISAYKSFSEI SPVLQFANFT SNQALLESFH
301: GFTRLHIIDF DIGYGGHWAS LMQELVLLRV DNHAPPLSLK ITVFASPDHH QHQLELAFTQ DNLKHFASEI NISLDIQVLS LDLLASLSWP SSDKEEAVAV
401: NLSPASFSNT PSSLLLRFVK HLSPSIIVCS DRGGCERTDL PFPQQLLHSL QSHAALLESL DAVNANLDAM HKIERFLIQP EIEKLVLDRS RPIQRPMMTW
501: HAMFMQMGFS PVTHSNFTES QAECLVQRTP VRGFHVEKKH NSLLLCWQRT ELVGVSAWRC RS
101: SLELNNILQT SQSPATFHHS DYTSLGSFGV VVDTTTGFGG LDHSVPALFQ SQVPPQHPVL INQSQTHFTQ NPSLLYGHQI PAAKRLNQGG SVGEGMITEQ
201: LLKVAEVMER GGETSVAQGI LARLNQQLSS PVGKAFERAA FYYIEALHNS LLHNNKASQT PLNPYSLIFK ISAYKSFSEI SPVLQFANFT SNQALLESFH
301: GFTRLHIIDF DIGYGGHWAS LMQELVLLRV DNHAPPLSLK ITVFASPDHH QHQLELAFTQ DNLKHFASEI NISLDIQVLS LDLLASLSWP SSDKEEAVAV
401: NLSPASFSNT PSSLLLRFVK HLSPSIIVCS DRGGCERTDL PFPQQLLHSL QSHAALLESL DAVNANLDAM HKIERFLIQP EIEKLVLDRS RPIQRPMMTW
501: HAMFMQMGFS PVTHSNFTES QAECLVQRTP VRGFHVEKKH NSLLLCWQRT ELVGVSAWRC RS
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.