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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d013027_P002
Zm00001d019343_P001
Zm00001d034575_P001
Zm00001d050219_P004

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60630.1 Zm00001d019343_P001 AT1G72030.1 21798944
AT4G00150.1 Zm00001d050219_P004 AT1G60490.1 21798944
AT4G00150.1 Zm00001d013027_P002 AT5G66720.1 21798944
AT4G00150.1 Zm00001d034575_P001 AT5G66720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022162_P001 Maize cytosol 23.72 92.73
EER91968 Sorghum cytosol, mitochondrion 91.47 92.19
Zm00001d042852_P001 Maize cytosol 33.95 89.02
Zm00001d035873_P001 Maize cytosol, plastid 39.38 88.81
Zm00001d002023_P001 Maize cytosol, mitochondrion, peroxisome, plastid 45.74 83.33
Zm00001d047957_P001 Maize cytosol 16.12 80.62
Os10t0551200-01 Rice cytosol 48.22 78.14
Zm00001d031615_P001 Maize cytosol 32.71 77.57
HORVU1Hr1G053510.1 Barley plastid 73.33 76.29
TraesCS1B01G223400.1 Wheat cytosol, plastid 73.8 76.28
TraesCS1D01G212800.1 Wheat cytosol 73.33 76.17
TraesCS1A01G209400.1 Wheat mitochondrion, plastid 73.64 76.0
Zm00001d027569_P001 Maize plastid 35.5 73.16
Zm00001d018956_P001 Maize plastid 15.04 67.83
Zm00001d027292_P001 Maize peroxisome 45.12 60.5
Zm00001d022034_P001 Maize cytosol 25.27 53.27
Zm00001d045589_P001 Maize cytosol 34.42 44.4
GSMUA_Achr11P... Banana cytosol 38.6 41.85
Zm00001d002718_P001 Maize cytosol 44.96 40.22
Zm00001d051387_P001 Maize cytosol 44.03 40.11
GSMUA_Achr5P20860_001 Banana cytosol 34.26 39.89
Zm00001d026158_P001 Maize cytosol 42.79 38.44
Zm00001d017513_P001 Maize cytosol, mitochondrion, nucleus 42.02 38.39
GSMUA_Achr8P11160_001 Banana cytosol 39.53 38.23
Bra014479.1-P Field mustard cytosol, peroxisome, plastid 10.54 37.36
VIT_02s0154g00400.t01 Wine grape cytosol 29.15 36.72
AT4G00150.1 Thale cress cytosol, plastid 30.54 35.3
Solyc08g078800.1.1 Tomato plastid 25.58 34.81
GSMUA_Achr11P... Banana cytosol 37.21 34.68
CDY63061 Canola cytosol, plastid 29.15 33.45
Bra037319.1-P Field mustard cytosol, plastid 29.15 33.45
CDY63062 Canola cytosol, plastid 29.15 33.45
CDX89065 Canola nucleus 26.98 31.64
VIT_15s0048g00270.t01 Wine grape extracellular, golgi, mitochondrion, nucleus 37.67 31.35
CDX95633 Canola cytosol 26.67 31.05
CDY48367 Canola cytosol 26.98 30.85
Bra003311.1-P Field mustard nucleus 24.03 30.63
PGSC0003DMT400066799 Potato cytosol, nucleus, vacuole 36.12 30.34
Solyc01g090950.2.1 Tomato cytosol 36.12 30.3
CDX83398 Canola cytosol 27.44 30.0
AT3G60630.1 Thale cress cytosol 28.84 29.86
CDY67934 Canola cytosol 27.44 29.6
KRH75351 Soybean cytosol 34.11 29.57
KRG88927 Soybean cytosol 33.8 29.26
Bra000375.1-P Field mustard cytosol 27.29 29.0
PGSC0003DMT400012104 Potato plastid 31.32 28.86
CDY56248 Canola cytosol 26.67 28.62
KRH76167 Soybean cytosol 32.4 28.36
AT2G45160.1 Thale cress cytosol 27.29 27.5
KRH65380 Soybean cytosol 31.16 27.46
Zm00001d053163_P001 Maize cytosol 17.83 24.31
Zm00001d041919_P001 Maize cytosol, peroxisome, plastid 16.43 21.54
Zm00001d028526_P001 Maize cytosol 15.97 18.26
Protein Annotations
EMBL:KJ727757EnsemblPlants:Zm00001d029855_P001EnsemblPlants:Zm00001d029855_T001EnsemblPlantsGene:Zm00001d029855EntrezGene:100274201GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:IPR005202InterPro:TF_GRASPANTHER:PTHR31636PANTHER:PTHR31636:SF125PFAM:PF03514PFscan:PS50985
ProteinID:ONL99731.1SEG:segUniParc:UPI000220B07BUniProt:A0A060D6K6MapMan:15.5.12:
Description
GRAS-transcription factor 33Scarecrow-like protein 6
Coordinates
chr1:-:90443929..90445866
Molecular Weight (calculated)
67240.6 Da
IEP (calculated)
6.474
GRAVY (calculated)
0.081
Length
645 amino acids
Sequence
(BLAST)
001: MRGMLFAGSA REGHAGTLLQ LQLQHQRQGL AAGKVSGAGD LWEPTSVLDR RHSPSPSPPT SVPTLSSPLG AATAGVAALA GANAKNVSPP PVAAAAWPGG
101: GGAEEAVAGG KEEWQLTPLD MGLGAGEGWD AADAAAPPGL APDHTFLRWI IGGEDASAAM GSVMDPPVLE LDHAPSMMSP AFGSTMPFAP AMEDAKPVPF
201: GHTPNFLLHH CHQHHPQPHA AFFGSHPSLD AAPQPKRPHP MAGAPAPKLP SFPGPVAQAG GGFASALKPK AEAGNDEAAA AVDQLAEAAR LAEAGDAFGA
301: REILARLNYR LPAVPTAGTP LLRSAFYFKE ALRVALSPTG EALAPPAVST PYDVVLKLGA YKAFSEVSPV LQFAHLTCVQ AVLDELGAAG RIHVLDLDIG
401: MGEQWASLMQ ELAQRSPAAT LKVTALVSPA SHHPLELNLI HENLSGFARE LGVFLQFAAY NVDALDPAEL VAITSGDAVA VHLPVGSAHV AAMPAVLRLV
501: KRLGAKVVVS VDRGCDRTEL SFSTHLLQAF QSCVSLLDSI DAVGGADAEA VGRIERFMVQ PDVERRVVSR HRAAVAVDKP PPLPWRTVLA SAGFVPVQAS
601: TFAESQAEAL LKRMALMGFR VEKRGGALCL YWQRGELVSV SAWRC
Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
Arabidopsis Description
SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.