Factsheet for Zm00001d034575_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013571_P001
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d018045_P001
Zm00001d033419_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d051589_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66720.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT5G66720.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT5G66720.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT5G66720.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT5G66720.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT5G66720.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT5G66720.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G66720.1	Zm00001d013571_P001	AT4G19700.1	21798944
AT5G66720.1	Zm00001d033419_P001	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90674	Sorghum	mitochondrion, plastid	92.7	92.7
Zm00001d013027_P002	Maize	mitochondrion	89.06	88.68
Os03t0809300-01	Rice	plastid	79.18	77.04
TraesCS5D01G472400.1	Wheat	plastid	77.25	74.84
TraesCS5B01G470500.1	Wheat	plastid	76.61	74.53
TraesCS5A01G460700.1	Wheat	plastid	72.96	73.75
GSMUA_Achr8P31180_001	Banana	cytosol	24.25	69.75
VIT_04s0023g01400.t01	Wine grape	plastid	44.42	54.62
KRH69944	Soybean	cytosol, plastid	41.42	53.02
Solyc04g080090.2.1	Tomato	mitochondrion, plastid	42.7	52.51
GSMUA_Achr6P35080_001	Banana	plastid	52.58	51.91
KRH08301	Soybean	cytosol	41.63	51.32
PGSC0003DMT400013180	Potato	mitochondrion	43.13	51.15
GSMUA_Achr9P09210_001	Banana	mitochondrion, plastid	51.29	50.85
AT5G66720.1	Thale cress	plastid	42.06	47.34
GSMUA_AchrUn_...	Banana	plastid	46.35	45.76
CDY60192	Canola	mitochondrion	45.28	45.18
Bra038489.1-P	Field mustard	mitochondrion	45.28	45.18
KRH15248	Soybean	mitochondrion	48.93	45.06
CDY40532	Canola	mitochondrion	45.28	44.99
AT4G16580.1	Thale cress	mitochondrion	44.85	44.75
CDY53852	Canola	plastid	39.27	44.74
Bra012095.1-P	Field mustard	plastid	39.27	44.74
KRH05793	Soybean	mitochondrion	48.5	44.66
CDY30759	Canola	plastid	39.27	44.63
KRH28642	Soybean	mitochondrion	40.34	44.44
Solyc12g089090.1.1	Tomato	mitochondrion	49.36	44.32
VIT_18s0001g12160.t01	Wine grape	extracellular	49.36	44.32
HORVU6Hr1G019900.1	Barley	plastid	40.77	44.19
PGSC0003DMT400039957	Potato	mitochondrion	48.93	43.93
KRH76843	Soybean	plastid	40.77	43.08
Zm00001d051202_P001	Maize	peroxisome	21.89	30.72
Zm00001d051200_P001	Maize	cytosol	21.67	30.42
Zm00001d047249_P001	Maize	cytosol	19.96	29.43
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	22.32	29.05
Zm00001d039745_P001	Maize	plastid	20.39	28.88
Zm00001d051199_P001	Maize	cytosol	18.03	26.42
GSMUA_Achr8P31190_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	18.88	25.73
Zm00001d017325_P001	Maize	cytoskeleton, cytosol, peroxisome	19.1	23.55
Zm00001d014291_P001	Maize	plastid	24.46	20.18

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100191645	Gene3D:3.60.40.10	MapMan:35.1	UniProt:B4F9L2
EMBL:BT033800	EMBL:BT060734	EMBL:BT062884	EMBL:BT067320	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	ProteinID:ONM10643.1	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI00017B61C0	EnsemblPlantsGene:Zm00001d034575	EnsemblPlants:Zm00001d034575_P001	EnsemblPlants:Zm00001d034575_T001	:	:

Description

Probable protein phosphatase 2C 55

Coordinates

chr1:-:296750495..296755871

Molecular Weight (calculated)

49662.9 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.199

Length

466 amino acids

Sequence
(BLAST)

001: MLAGYGGGGR SVHLSSHKDL LLGRCGRSFL FGNTWFLLST YPARLLHTTD RRAPSAFVAA INRVPCVRSH CTGQGLLQRG SIVMAACGYV LRRAELGAAK
101: RQQPDKDPSG GTRASRIAAM GSLGSAARPE VSFRYRGLEH CKKIGASLKC REPWGNSAFW TNATGPGWKL SFTVEPWTKD FSTACAAPYS AGATEDQLPL
201: NEKMNSSTVG MSPVSEKLKL LSGSCYLPHP AKEATGGEDA HFISIDEHVI GVADGVGGWA DLGVDAGLYA KELMRNSMSA IKDEPEGTID PTRVLEKAYI
301: STKARGSSTA CIITLKDQGI HAVNLGDSGF VVVRDGRTVL RSPSQQHDFN FTYQLESGGG SDLPSSAQVF HFPVAPGDVI VAGTDGLFDN LYNNEISGVI
401: VEALRVGLEP QIAAQKIAAL ARQRATDKNR QSPFASAAQE AGYRYYGGKL DDITVVVSYV KSAGAP

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.