Factsheet for VIT_18s0001g12160.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 5
peroxisome 1
nucleus 2

Predictors

GFP

MS/MS

Papers

extracellular: 26106900

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P31180_001	Banana	cytosol	22.93	73.46
VIT_04s0023g01400.t01	Wine grape	plastid	52.99	72.56
Solyc04g080090.2.1	Tomato	mitochondrion, plastid	49.52	67.81
PGSC0003DMT400013180	Potato	mitochondrion	51.06	67.43
KRH15248	Soybean	mitochondrion	64.35	66.01
Solyc12g089090.1.1	Tomato	mitochondrion	65.9	65.9
PGSC0003DMT400039957	Potato	mitochondrion	65.9	65.9
KRH05793	Soybean	mitochondrion	63.01	64.62
GSMUA_Achr9P09210_001	Banana	mitochondrion, plastid	55.11	60.85
CDY60192	Canola	mitochondrion	54.53	60.6
Bra038489.1-P	Field mustard	mitochondrion	54.34	60.39
AT4G16580.1	Thale cress	mitochondrion	53.76	59.74
CDY40532	Canola	mitochondrion	53.76	59.49
GSMUA_Achr6P35080_001	Banana	plastid	53.95	59.32
TraesCS6A01G111100.1	Wheat	mitochondrion	42.0	56.77
TraesCS6D01G099700.1	Wheat	mitochondrion	42.0	56.48
GSMUA_AchrUn_...	Banana	plastid	50.29	55.3
TraesCS6B01G139200.1	Wheat	mitochondrion	41.04	52.21
EER90674	Sorghum	mitochondrion, plastid	45.86	51.07
HORVU6Hr1G019900.1	Barley	plastid	42.2	50.93
Zm00001d013027_P002	Maize	mitochondrion	45.09	50.0
Zm00001d034575_P001	Maize	plastid	44.32	49.36
Os03t0809300-01	Rice	plastid	44.7	48.43
VIT_08s0007g05820.t01	Wine grape	cytosol	22.54	47.56
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	21.58	43.24
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	16.96	38.1
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	16.57	37.55
VIT_06s0004g07360.t01	Wine grape	plastid	18.69	31.19
GSMUA_Achr8P31190_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	20.42	30.99
VIT_12s0055g01130.t01	Wine grape	plastid	20.62	13.86

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100252344	wikigene:100252344	Gene3D:3.60.40.10	MapMan:35.1
ProteinID:CCB45927	ProteinID:CCB45927.1	UniProt:F6H1G8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100252344	wikigene:LOC100252344	PFAM:PF07228	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	TIGR:TC65033	UniParc:UPI0001985333	ArrayExpress:VIT_18s0001g12160	EnsemblPlantsGene:VIT_18s0001g12160	EnsemblPlants:VIT_18s0001g12160.t01
RefSeq:XP_002281672	RefSeq:XP_002281672.1	RefSeq:XP_010664663.1	RefSeq:XP_010664664.1	RefSeq:XP_010664665.1	RefSeq:XP_010664666.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:10334571..10341952

Molecular Weight (calculated)

56001.6 Da

IEP (calculated)

7.636

GRAVY (calculated)

-0.234

Length

519 amino acids

Sequence
(BLAST)

001: MSSSYFSRLR KAVHHGIQRS TIGQGGGLQD SVEVLLWRGK LLFGNSRLFH SKPFSSLSDL HVLLHPGTDF VARSDSHLGN QRRTLSVVGT LSRAFSIPSV
101: SGPSLQACAY HIDSALSKPG VFSYVSQKTP MAACSPRAVL GDCHLDNFIS RHVHLSVSIK NGSNFHGNRG FNSCRKASMS LTIQEQSNNC LLYGYFIYNA
201: AKRRSNSNPY ILSGLRDFHG SLSACYSAGT APDMSFHNSQ LEEQLANSSV SSEQNIQSDR TLKFLSGSCY LPHPDKEETG GEDAHFICID EHAIGVADGV
301: GGWAELGVDS GQYARELMSN SVTAIQEEPK GSVDPARVLE KAHFSTKAKG SSTACIIALT EQGLHAINLG DSGFIVIRDG CTVFRSPVQQ HDFNFTYQLE
401: SGNGGDLPSS GQVFTIPVAP GDVVIAGTDG LFDNLYNNEV IAVVVHATRA SLGPQVTAQK IAALARQRAQ DKNRQTPFST AAQDAGIRYY GGKLDDITVV
501: VSYITSYSNG YRSSNSSWL

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.