Factsheet for VIT_06s0004g07360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
cytosol 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30165	Soybean	cytosol	50.8	71.17
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	56.59	70.68
KRG98206	Soybean	cytosol	72.03	69.35
Solyc06g007350.2.1	Tomato	plastid	65.59	66.67
AT2G30170.1	Thale cress	mitochondrion, plastid	61.41	64.09
PGSC0003DMT400052991	Potato	plastid	63.02	64.05
CDY10717	Canola	plastid	61.09	63.12
CDY02041	Canola	plastid	60.77	62.79
Bra018331.1-P	Field mustard	plastid	60.77	62.58
TraesCS3A01G100000.1	Wheat	plastid	59.16	57.14
TraesCS3B01G116700.1	Wheat	plastid	58.84	56.83
TraesCS3D01G100600.1	Wheat	plastid	58.84	56.83
KXG31802	Sorghum	plastid	58.2	55.86
Os01t0164600-01	Rice	plastid	58.84	55.29
Zm00001d039745_P001	Maize	plastid	58.2	55.02
HORVU3Hr1G018110.1	Barley	plastid	58.84	51.84
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	28.62	34.36
VIT_08s0007g05820.t01	Wine grape	cytosol	26.37	33.33
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	19.61	26.41
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	18.97	25.76
VIT_04s0023g01400.t01	Wine grape	plastid	30.87	25.33
VIT_18s0001g12160.t01	Wine grape	extracellular	31.19	18.69
VIT_12s0055g01130.t01	Wine grape	plastid	26.69	10.75

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:1.1.1.4.1.4	EntrezGene:100267390	wikigene:100267390	Gene3D:3.60.40.10
ProteinID:CBI15879	ProteinID:CBI15879.3	UniProt:D7SJQ3	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100267390	wikigene:LOC100267390	PFAM:PF07228	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
TIGR:TC54868	TIGR:TC62627	UniParc:UPI00019835AD	ArrayExpress:VIT_06s0004g07360	EnsemblPlantsGene:VIT_06s0004g07360	EnsemblPlants:VIT_06s0004g07360.t01
unigene:Vvi.9518	RefSeq:XP_002273518	RefSeq:XP_002273518.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:8133682..8136979

Molecular Weight (calculated)

33311.5 Da

IEP (calculated)

5.169

GRAVY (calculated)

0.006

Length

311 amino acids

Sequence
(BLAST)

001: MAIPILKAAI SDSHEFFNSL SHTTRLLSIP KKRRLIVSAS ASASASAPSE INPLRSEVSF CVGTHLIPHP NKVDRGGEDA FFVSSYNGGV VAVADGVSGW
101: AEQNVDPSLF PKELMANASD LVGDEEVNYD PQILLKKAHT ATSSKGSATV IVAMLEKNGV LKIASVGDCG LRVIRKGKLI FSTLPQEHYF DCPYQLSSEV
201: ITQTYLDATV TSVKLLEGDT IVMGSDGLFD NVFDHEIVST ITQYSDAAEA AKALADLASN HSMDSNFESP YSLEARTRGF DVPFWKKVLG VKLTGGKPDD
301: ITVVVGQVVS S

Best Arabidopsis Sequence Match ( AT2G30170.1 )
(BLAST)

001: MAIPVTRMMV PHAIPSLRLS HPNPSRVDFL CRCAPSEIQP LRPELSLSVG IHAIPHPDKV EKGGEDAFFV SSYRGGVMAV ADGVSGWAEQ DVDPSLFSKE
101: LMANASRLVD DQEVRYDPGF LIDKAHTATT SRGSATIILA MLEEVGILKI GNVGDCGLKL LREGQIIFAT APQEHYFDCP YQLSSEGSAQ TYLDASFSIV
201: EVQKGDVIVM GSDGLFDNVF DHEIVSIVTK HTDVAESSRL LAEVASSHSR DTEFESPYAL EARAKGFDVP LWKKVLGKKL TGGKLDDVTV IVAKVVSS

Arabidopsis Description

Probable protein phosphatase 2C 26 [Source:UniProtKB/Swiss-Prot;Acc:O64730]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.