CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018331.1-P	Field mustard	plastid	98.01	97.68
CDY10717	Canola	plastid	97.67	97.67
AT2G30170.1	Thale cress	mitochondrion, plastid	86.05	86.91
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	52.49	63.45
KRH30165	Soybean	cytosol	45.18	61.26
VIT_06s0004g07360.t01	Wine grape	plastid	62.79	60.77
KRG98206	Soybean	cytosol	61.46	57.28
Solyc06g007350.2.1	Tomato	plastid	55.81	54.9
PGSC0003DMT400052991	Potato	plastid	55.15	54.25
TraesCS3D01G100600.1	Wheat	plastid	52.49	49.07
TraesCS3B01G116700.1	Wheat	plastid	52.49	49.07
TraesCS3A01G100000.1	Wheat	plastid	52.49	49.07
Os01t0164600-01	Rice	plastid	53.49	48.64
KXG31802	Sorghum	plastid	52.16	48.46
Zm00001d039745_P001	Maize	plastid	51.83	47.42
HORVU3Hr1G018110.1	Barley	plastid	52.49	44.76
CDY72337	Canola	cytosol, peroxisome	26.25	22.38
CDY53852	Canola	plastid	29.24	21.52
CDY30759	Canola	plastid	28.9	21.22
CDY60192	Canola	mitochondrion	31.23	20.13
CDY40532	Canola	mitochondrion	31.23	20.04
CDX68984	Canola	plastid	26.91	11.59
CDX75361	Canola	plastid	24.25	8.66

Protein Annotations

EnsemblPlants:CDY02041	EnsemblPlantsGene:GSBRNA2T00113386001	GO:A0A078ELK5	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR12320
PFAM:PF07228	PFscan:PS51746	ProteinID:CDY02041	ProteinID:CDY02041.1	SEG:seg	SMART:SM00331
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EDC57F	MapMan:1.1.1.4.1.4	:	:

Description

BnaC04g14600D

Coordinates

chrLK031931:-:777830..779754

Molecular Weight (calculated)

32404.6 Da

IEP (calculated)

4.919

GRAVY (calculated)

-0.040

Length

301 amino acids

Sequence
(BLAST)

001: MAIPMTRMMV PQVSSSLRLS HRNLSNSTRG ALLCRCAPSE LQPLRSGLSL SAGAHAIPHP DKIEKGGEDA LFVSSYRGGV IAVADGVSSW AEQDVDPSLF
101: SKELMANASR LVDDEEVRYD PGFLIDKAHT ATTSRGSATI IVAMLEEVGV LKIGNVGDCG LKLLRQGQII FSTTPQEHYF DCPFQLSSEG SAQTYMDASF
201: NIMEVKKGDV IVMGSDGLFD NVFDHEIVNI VTKHTDVAES SRLLAEVASS HSRDPGFESP YALEARAKGF DVPLWKTALG MKLTGGKLDD VTVIVAQVVD
301: S

Best Arabidopsis Sequence Match ( AT2G30170.1 )
(BLAST)

001: MAIPVTRMMV PHAIPSLRLS HPNPSRVDFL CRCAPSEIQP LRPELSLSVG IHAIPHPDKV EKGGEDAFFV SSYRGGVMAV ADGVSGWAEQ DVDPSLFSKE
101: LMANASRLVD DQEVRYDPGF LIDKAHTATT SRGSATIILA MLEEVGILKI GNVGDCGLKL LREGQIIFAT APQEHYFDCP YQLSSEGSAQ TYLDASFSIV
201: EVQKGDVIVM GSDGLFDNVF DHEIVSIVTK HTDVAESSRL LAEVASSHSR DTEFESPYAL EARAKGFDVP LWKKVLGKKL TGGKLDDVTV IVAKVVSS

Arabidopsis Description

Probable protein phosphatase 2C 26 [Source:UniProtKB/Swiss-Prot;Acc:O64730]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.