Factsheet for PGSC0003DMT400052991

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007350.2.1	Tomato	plastid	93.14	93.14
VIT_06s0004g07360.t01	Wine grape	plastid	64.05	63.02
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plastid	50.0	61.45
AT2G30170.1	Thale cress	mitochondrion, plastid	58.5	60.07
KRH30165	Soybean	cytosol	41.83	57.66
KRG98206	Soybean	cytosol	59.8	56.66
TraesCS3A01G100000.1	Wheat	plastid	58.82	55.9
CDY10717	Canola	plastid	54.9	55.81
TraesCS3D01G100600.1	Wheat	plastid	58.5	55.59
TraesCS3B01G116700.1	Wheat	plastid	58.5	55.59
Bra018331.1-P	Field mustard	plastid	54.58	55.3
CDY02041	Canola	plastid	54.25	55.15
Os01t0164600-01	Rice	plastid	58.5	54.08
KXG31802	Sorghum	plastid	56.86	53.7
Zm00001d039745_P001	Maize	plastid	56.86	52.89
HORVU3Hr1G018110.1	Barley	plastid	58.5	50.71
PGSC0003DMT400030602	Potato	cytosol	8.82	31.76
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	16.01	27.84
PGSC0003DMT400087322	Potato	cytosol	24.84	27.14
PGSC0003DMT400096525	Potato	mitochondrion	16.01	26.63
PGSC0003DMT400004514	Potato	nucleus	26.8	25.62
PGSC0003DMT400021083	Potato	cytosol	25.82	25.16
PGSC0003DMT400002811	Potato	plastid	31.05	25.13
PGSC0003DMT400036150	Potato	mitochondrion, plastid	30.07	24.66
PGSC0003DMT400036153	Potato	mitochondrion, plastid	30.07	24.66
PGSC0003DMT400013180	Potato	mitochondrion	29.09	22.65
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	9.8	22.06
PGSC0003DMT400049848	Potato	cytosol	21.57	21.15
PGSC0003DMT400039957	Potato	mitochondrion	29.74	17.53
PGSC0003DMT400032725	Potato	nucleus	28.43	9.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400052991	EnsemblPlantsGene:PGSC0003DMG400020560	EntrezGene:102606279	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR12320
PFscan:PS51746	PGSC:PGSC0003DMG400020560	RefSeq:XP_006344074.1	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000295E9B6	UniProt:M1BU88	MapMan:1.1.1.4.1.4	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400020560]

Coordinates

chr6:+:2949082..2954857

Molecular Weight (calculated)

33157.6 Da

IEP (calculated)

5.385

GRAVY (calculated)

0.066

Length

306 amino acids

Sequence
(BLAST)

001: MAISIFRPSV SLPQQFLYSI NPQKFSSISV IRKKQSFLRC ASSDSAPPLT RQEMSLSVGM YLIPHPNKVE KGGEDAFFVS SDDGEVIVVA DGVSGWAEKN
101: VDPALFSREL VANVSSLVGN VEVNDDPRIL IKGAHAATSS IGSATVLVSV FKNGILKIGS VGDCGLRVIR KGQMIFSTFP LEHYFDCPYQ LSSESVTQTY
201: LDAIVSTVNL QVGDTIVMGS DGLFDNIFDQ EIVSVVTTND DVSNAAKALA DLARNHSVDT KFDSPFSLEA RARGFDVPWW KKVFGMKFTG GKLDDITVIV
301: GKVKTT

Best Arabidopsis Sequence Match ( AT2G30170.1 )
(BLAST)

001: MAIPVTRMMV PHAIPSLRLS HPNPSRVDFL CRCAPSEIQP LRPELSLSVG IHAIPHPDKV EKGGEDAFFV SSYRGGVMAV ADGVSGWAEQ DVDPSLFSKE
101: LMANASRLVD DQEVRYDPGF LIDKAHTATT SRGSATIILA MLEEVGILKI GNVGDCGLKL LREGQIIFAT APQEHYFDCP YQLSSEGSAQ TYLDASFSIV
201: EVQKGDVIVM GSDGLFDNVF DHEIVSIVTK HTDVAESSRL LAEVASSHSR DTEFESPYAL EARAKGFDVP LWKKVLGKKL TGGKLDDVTV IVAKVVSS

Arabidopsis Description

Probable protein phosphatase 2C 26 [Source:UniProtKB/Swiss-Prot;Acc:O64730]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.