Factsheet for PGSC0003DMT400004514

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g081000.2.1	Tomato	cytosol	85.0	85.8
PGSC0003DMT400087322	Potato	cytosol	48.12	55.0
PGSC0003DMT400096525	Potato	mitochondrion	31.56	54.89
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	21.56	50.74
VIT_08s0007g05820.t01	Wine grape	cytosol	38.75	50.41
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	36.25	44.79
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	22.81	41.48
PGSC0003DMT400021083	Potato	cytosol	39.69	40.45
PGSC0003DMT400030602	Potato	cytosol	10.31	38.82
PGSC0003DMT400002811	Potato	plastid	37.81	32.01
PGSC0003DMT400049848	Potato	cytosol	30.94	31.73
PGSC0003DMT400036150	Potato	mitochondrion, plastid	35.62	30.56
PGSC0003DMT400013180	Potato	mitochondrion	37.5	30.53
PGSC0003DMT400036153	Potato	mitochondrion, plastid	34.69	29.76
PGSC0003DMT400052991	Potato	plastid	25.62	26.8
GSMUA_Achr5P10960_001	Banana	cytosol	38.12	23.83
PGSC0003DMT400039957	Potato	mitochondrion	38.44	23.7
PGSC0003DMT400032725	Potato	nucleus	27.81	9.31

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102601852	Gene3D:3.60.40.10	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	UniProt:M0ZNK0	PFAM:PF07228	EnsemblPlantsGene:PGSC0003DMG400001795
PGSC:PGSC0003DMG400001795	EnsemblPlants:PGSC0003DMT400004514	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320
PANTHER:PTHR12320:SF14	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI00029537A6	RefSeq:XP_015167395.1

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400001795]

Coordinates

chr1:+:67759892..67761193

Molecular Weight (calculated)

34921.3 Da

IEP (calculated)

4.151

GRAVY (calculated)

-0.102

Length

320 amino acids

Sequence
(BLAST)

001: MAIDIVPPKR RRLTDESEFD VITGDDDEQL QILLCSEELT PAYDYMDEDI KPIQTFISEE VDSRDVGVTG MTIMVAGSSY IPKLNAEKPL GEDASFICLN
101: KQVIGVADGV GGWAKKGIDS GVYSRELMKN AELAIQKQSS ITTIDLMKVL NEAFSNTKAK GSSTACILSL SDDTLHAVNV GDSGFVVIRE GIIVYKSKVQ
201: QSRFNCPFQL GNGSTSDDPS VAEKISVPVI AGDVIVLGTD GLFDNVHDFE LEAIVNSGVE SWESDVPETL AWRIAQYALD NAKNTEVYTP FTRECFKDGV
301: VRNGGKYDDI TVIVANIWPL

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.