Factsheet for PGSC0003DMT400049861

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021083	Potato	cytosol	92.05	51.59
Solyc10g079180.2.1	Tomato	cytoskeleton, cytosol, peroxisome	78.98	43.71
PGSC0003DMT400049848	Potato	cytosol	70.45	39.74
VIT_08s0007g05820.t01	Wine grape	cytosol	51.14	36.59
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	27.84	36.03
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	46.02	31.27
PGSC0003DMT400096525	Potato	mitochondrion	30.68	29.35
PGSC0003DMT400087322	Potato	cytosol	43.75	27.5
PGSC0003DMT400004514	Potato	nucleus	41.48	22.81
PGSC0003DMT400002811	Potato	plastid	40.34	18.78
PGSC0003DMT400036150	Potato	mitochondrion, plastid	39.77	18.77
PGSC0003DMT400036153	Potato	mitochondrion, plastid	38.64	18.23
PGSC0003DMT400013180	Potato	mitochondrion	38.07	17.05
PGSC0003DMT400052991	Potato	plastid	27.84	16.01
GSMUA_Achr5P10960_001	Banana	cytosol	42.05	14.45
PGSC0003DMT400039957	Potato	mitochondrion	38.07	12.91
PGSC0003DMT400030602	Potato	cytosol	4.55	9.41
PGSC0003DMT400032725	Potato	nucleus	28.98	5.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400049861	EnsemblPlantsGene:PGSC0003DMG400019373	EntrezGene:107062851	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16
ncoils:Coil	PANTHER:PTHR12320	PANTHER:PTHR12320:SF14	PFAM:PF07228	PFscan:PS51746	PGSC:PGSC0003DMG400019373
RefSeq:XP_015169482.1	SUPFAM:SSF81606	UniParc:UPI0002950C51	UniProt:M1BPF9	MapMan:35.1	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400019373]

Coordinates

chr12:+:18953603..18954133

Molecular Weight (calculated)

19509.1 Da

IEP (calculated)

4.660

GRAVY (calculated)

-0.439

Length

176 amino acids

Sequence
(BLAST)

001: MKGDHVNPKR VLEEAYKNTN SKGSSTTCII TLNSVKNTIV AANVGDSGFL LIRKGKITYK SPIQQRGFGC PYQLGNCNSD NPSVAQEMEL NIEKDDILMV
101: GTDEMLDNIF ESEIEELVER AIDQKLKAEE LASQIGNIDL YNSFDRFADT PYARASEGRH KGGKIDDITV VVAYIQ

Best Arabidopsis Sequence Match ( AT5G66720.1 )
(BLAST)

001: MSATALSRLN PVSQFGFQRI VAGKSKSFFS NSGQRRLFSD SSRFRQAMAA SGSLPVFGDA CLDDLVTTCS NGLDFTKKRS SGGSFTINCP VASMRLGKRG
101: GMMKNRLVCH YSVVDPLEKS RALFGTLSKS VHTSPMACFS VGPAHELSSL NGGSQESPPT TTTSLKSLRL VSGSCYLPHP EKEATGGEDA HFICDEEQAI
201: GVADGVGGWA EVGVNAGLFS RELMSYSVSA IQEQHKGSSI DPLVVLEKAH SQTKAKGSST ACIIVLKDKG LHAINLGDSG FTVVREGTTV FQSPVQQHGF
301: NFTYQLESGN SADVPSSGQV FTIDVQSGDV IVAGTDGVYD NLYNEEITGV VVSSVRAGLD PKGTAQKIAE LARQRAVDKK RQSPFATAAQ EAGYRYYGGK
401: LDDITAVVSY VTSS

Arabidopsis Description

Probable protein phosphatase 2C 80 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.