Factsheet for PGSC0003DMT400049848

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021083	Potato	cytosol	79.81	79.3
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	39.74	70.45
Solyc12g026410.1.1	Tomato	cytosol	66.03	68.44
VIT_08s0007g05820.t01	Wine grape	cytosol	36.22	45.94
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	32.69	39.38
PGSC0003DMT400096525	Potato	mitochondrion	23.08	39.13
PGSC0003DMT400087322	Potato	cytosol	31.73	35.36
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	15.38	35.29
PGSC0003DMT400030602	Potato	cytosol	8.97	32.94
PGSC0003DMT400004514	Potato	nucleus	31.73	30.94
PGSC0003DMT400002811	Potato	plastid	33.97	28.04
PGSC0003DMT400036150	Potato	mitochondrion, plastid	33.33	27.88
PGSC0003DMT400036153	Potato	mitochondrion, plastid	32.69	27.35
PGSC0003DMT400013180	Potato	mitochondrion	32.69	25.95
PGSC0003DMT400052991	Potato	plastid	21.15	21.57
PGSC0003DMT400039957	Potato	mitochondrion	34.94	21.0
GSMUA_Achr5P10960_001	Banana	cytosol	33.65	20.51
PGSC0003DMT400032725	Potato	nucleus	22.76	7.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400049848	EnsemblPlantsGene:PGSC0003DMG400019368	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR12320
PANTHER:PTHR12320:SF14	PFAM:PF07228	PFscan:PS51746	PGSC:PGSC0003DMG400019368	SEG:seg	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI000296DDFD	UniProt:M1BPF1	MapMan:35.1	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400019368]

Coordinates

chr12:-:18937472..18938410

Molecular Weight (calculated)

35399.6 Da

IEP (calculated)

6.645

GRAVY (calculated)

-0.331

Length

312 amino acids

Sequence
(BLAST)

001: MAACISSLGH DQYSSKIKFD KLFNLSRYKR YFDFSSHAIN YDNPENHSNK KLKFSHDDEF SSNKLPCLKM VVGSLYLPKD NPNKPLGEDA HSMHELYQTI
101: GVADGVGGWA LQGIDAGIYA RELMKNSFIA TYDEAMKGHV NPKRVLEEAY KNTNSKGSST ACIITHNSVK NTIVTANVGD SGFLLIRKGK IIYKSPIQQR
201: GFGCPYQLGN CNSDNPSVAQ EMELNVEKDD ILMVGTDWML DNIFESEIEE IVERAIDQKL KQRSWLVKLG TLLCIIHLID LQMHHMLEHL RDDIKEEKLV
301: ILLLLLIIYN NN

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.