Factsheet for PGSC0003DMT400036150

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036153	Potato	mitochondrion, plastid	96.25	96.25
PGSC0003DMT400002811	Potato	plastid	73.99	73.02
PGSC0003DMT400013180	Potato	mitochondrion	47.99	45.55
PGSC0003DMT400039957	Potato	mitochondrion	62.2	44.7
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	18.77	39.77
PGSC0003DMT400087322	Potato	cytosol	29.49	39.29
PGSC0003DMT400021083	Potato	cytosol	32.71	38.85
PGSC0003DMT400096525	Potato	mitochondrion	19.03	38.59
PGSC0003DMT400004514	Potato	nucleus	30.56	35.62
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	12.6	34.56
PGSC0003DMT400030602	Potato	cytosol	7.77	34.12
PGSC0003DMT400049848	Potato	cytosol	27.88	33.33
PGSC0003DMT400052991	Potato	plastid	24.66	30.07
PGSC0003DMT400032725	Potato	nucleus	26.01	10.15

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102580955	Gene3D:3.60.40.10	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1B3C4	PFAM:PF07228	EnsemblPlantsGene:PGSC0003DMG401013921
PGSC:PGSC0003DMG401013921	EnsemblPlants:PGSC0003DMT400036150	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320
PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002957068	RefSeq:XP_006366049.1

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG401013921]

Coordinates

chr7:-:54598952..54603790

Molecular Weight (calculated)

39860.0 Da

IEP (calculated)

6.838

GRAVY (calculated)

-0.153

Length

373 amino acids

Sequence
(BLAST)

001: MAVCGSRTHI GHFVGNMTAR RLQCSLSVKS CTVSYNKRGF QNVSKANISL GNKGRPNNFM LYQYFTTNVA KRRTNLNPHK GFGLEGFRNL SHECFFSGTA
101: SASNVSSDNS KGTEQVVDVV NSSEAKISLQ LNSGSFYLPH PAKAKTGGED AHFICTLTPA IGVADGVGGW ADLGIDAGLY ARELMSHSLS AIQDEPKGSV
201: DLIRVLEKAY VRTKAKGSST ACIVALTEGG LYAVNLGDSG FMLVRNGCAA FKSPSQQHGF NFPYQLDCNN AGDSPSSAMV FNITVVPGDV LIVGTDGLFD
301: NLYDEDISGV VFQAMEAGLG PQMTAQRIAE LAQLRAMDHT KSSPFSDGAR ESGFDYHGGK LDDITVVVSY ITE

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.