Factsheet for PGSC0003DMT400013180

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080090.2.1	Tomato	mitochondrion, plastid	93.89	97.36
GSMUA_Achr8P31180_001	Banana	cytosol	26.97	65.43
PGSC0003DMT400039957	Potato	mitochondrion	74.05	56.07
TraesCS6A01G111100.1	Wheat	mitochondrion	51.65	52.86
TraesCS6D01G099700.1	Wheat	mitochondrion	51.15	52.07
VIT_18s0001g12160.t01	Wine grape	extracellular	67.43	51.06
GSMUA_Achr9P09210_001	Banana	mitochondrion, plastid	60.31	50.43
KRH15248	Soybean	mitochondrion	64.12	49.8
GSMUA_Achr6P35080_001	Banana	plastid	59.54	49.58
PGSC0003DMT400002811	Potato	plastid	47.58	49.47
AT4G16580.1	Thale cress	mitochondrion	58.78	49.46
Bra038489.1-P	Field mustard	mitochondrion	58.52	49.25
CDY60192	Canola	mitochondrion	58.52	49.25
CDY40532	Canola	mitochondrion	58.02	48.61
TraesCS6B01G139200.1	Wheat	mitochondrion	50.38	48.53
HORVU6Hr1G019900.1	Barley	plastid	52.93	48.37
KRH05793	Soybean	mitochondrion	62.09	48.22
PGSC0003DMT400036150	Potato	mitochondrion, plastid	45.55	47.99
PGSC0003DMT400036153	Potato	mitochondrion, plastid	45.04	47.45
GSMUA_AchrUn_...	Banana	plastid	54.96	45.76
EER90674	Sorghum	mitochondrion, plastid	52.67	44.42
Zm00001d013027_P002	Maize	mitochondrion	52.42	44.02
Zm00001d034575_P001	Maize	plastid	51.15	43.13
Os03t0809300-01	Rice	plastid	50.13	41.13
PGSC0003DMT400096525	Potato	mitochondrion	19.08	40.76
PGSC0003DMT400087322	Potato	cytosol	27.23	38.21
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	17.05	38.07
PGSC0003DMT400021083	Potato	cytosol	30.03	37.58
PGSC0003DMT400004514	Potato	nucleus	30.53	37.5
PGSC0003DMT400030602	Potato	cytosol	7.89	36.47
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	11.7	33.82
PGSC0003DMT400049848	Potato	cytosol	25.95	32.69
PGSC0003DMT400052991	Potato	plastid	22.65	29.09
GSMUA_Achr8P31190_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	24.17	27.78
PGSC0003DMT400032725	Potato	nucleus	25.7	10.56

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102581490	Gene3D:3.60.40.10	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1A2F6	PFAM:PF07228	EnsemblPlantsGene:PGSC0003DMG400005149
PGSC:PGSC0003DMG400005149	EnsemblPlants:PGSC0003DMT400013180	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320
PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000294C3C2	RefSeq:XP_006341911.1
RefSeq:XP_006341912.1	RefSeq:XP_015161878.1	SEG:seg	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400005149]

Coordinates

chr4:-:69514246..69519450

Molecular Weight (calculated)

42063.7 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.130

Length

393 amino acids

Sequence
(BLAST)

001: MPSNYLFRVG GALRQGIRKS ISGQERGIQL VEIFSEERLL FGKSFCSVSS ARLSDLHVFV RPGAFAAAQT NLNIVNQRKN ISVISAIPRA FGFKGFHSSS
101: AACISAGAAP DVSFDNSLHE VQRASSANSS EQKIHIDRSL KLNSGSSYLP HPDKEEKGGE DAHFICIDEQ VIGIADGVGG WADVGVDAGE YSRELMANAV
201: MAIREEPKGS VDPARVLEKA YTLTRAKGSS TACIIALTDQ GLHAINLGDS GFMVIRDGCT VLKSPVQQHD FNFTYQLESG GTGGDSPTSG EVFKIPVAPG
301: DVIIAGTDGL FDNLYTSDIT AVVVHARRAH LPPQVVAQKI AALARERALD KNRQSPFSTA AQDAGIRFYG GKLDDVTVVV SYITSDKNEK LTF

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.