Factsheet for PGSC0003DMT400032725

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105020.2.1	Tomato	nucleus, plastid	88.7	80.69
HORVU1Hr1G064790.1	Barley	cytosol, peroxisome	9.94	50.53
OQU91878	Sorghum	cytosol	10.04	47.52
HORVU5Hr1G117220.2	Barley	mitochondrion	10.46	45.66
HORVU2Hr1G018620.1	Barley	cytosol	7.11	45.64
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	16.53	44.13
CDY72337	Canola	cytosol, peroxisome	15.38	41.64
Os10t0370000-02	Rice	peroxisome	18.72	38.49
TraesCS1D01G378200.1	Wheat	peroxisome, plastid	18.2	35.22
TraesCS4A01G038300.1	Wheat	cytosol	20.08	34.72
Os03t0192500-01	Rice	cytosol	20.61	34.62
TraesCS4D01G267000.1	Wheat	cytosol	19.98	34.54
TraesCS1B01G391400.1	Wheat	peroxisome, plastid	17.89	34.0
TraesCS4B01G267400.1	Wheat	cytosol	19.77	33.99
PGSC0003DMT400096525	Potato	mitochondrion	6.49	33.7
TraesCS1A01G371600.1	Wheat	peroxisome, plastid	17.68	33.6
HORVU1Hr1G082540.4	Barley	peroxisome, plastid	17.36	33.2
Zm00001d014291_P001	Maize	plastid	19.56	33.1
KXG39979	Sorghum	cytosol	19.46	31.26
VIT_12s0055g01130.t01	Wine grape	plastid	24.48	30.31
PGSC0003DMT400087322	Potato	cytosol	8.79	30.0
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	4.18	29.41
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	5.33	28.98
KRH10513	Soybean	mitochondrion, plastid	23.54	28.92
PGSC0003DMT400052991	Potato	plastid	9.1	28.43
AT4G33500.1	Thale cress	plastid	21.44	28.31
PGSC0003DMT400002811	Potato	plastid	11.19	28.31
PGSC0003DMT400004514	Potato	nucleus	9.31	27.81
CDX68984	Canola	plastid	20.29	27.75
GSMUA_Achr2P22130_001	Banana	plastid	22.18	27.68
PGSC0003DMT400036153	Potato	mitochondrion, plastid	10.36	26.54
PGSC0003DMT400021083	Potato	cytosol	8.68	26.43
PGSC0003DMT400036150	Potato	mitochondrion, plastid	10.15	26.01
PGSC0003DMT400013180	Potato	mitochondrion	10.56	25.7
Bra011448.1-P	Field mustard	plastid	20.92	25.19
GSMUA_Achr6P10470_001	Banana	nucleus	22.07	23.47
PGSC0003DMT400049848	Potato	cytosol	7.43	22.76
PGSC0003DMT400039957	Potato	mitochondrion	12.13	22.35
CDX75361	Canola	plastid	19.35	21.95
PGSC0003DMT400030602	Potato	cytosol	1.88	21.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400032725	EnsemblPlantsGene:PGSC0003DMG400012566	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	ncoils:Coil
PANTHER:PTHR12320	PANTHER:PTHR12320:SF9	PFAM:PF07228	PFscan:PS51746	PGSC:PGSC0003DMG400012566	SEG:seg
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI00029507E3	UniProt:M1AXW6	MapMan:35.1	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400012566]

Coordinates

chr1:-:81776536..81782937

Molecular Weight (calculated)

102867.0 Da

IEP (calculated)

3.670

GRAVY (calculated)

-0.453

Length

956 amino acids

Sequence
(BLAST)

001: MADSLCKFLD ARCITGSQFL ATYFSAQKPL LFPTLVRRKR RRKSLHIAFC STSISPNLDV VSTHEHSDGT LLFRFGDPSE IEKEDELEEP LLGVEEVGRD
101: SEEEFSVVKV LDGDNEREVI VKKVEREARG EAVTVVTDAG VSESVVIGNG RSDFVEVETG LSEKFLGDSA DEIGLISPEG IQNESVAEVG IENAGHVEEI
201: FEKKDDSEAS VPPPPENSIP SLEVEEKMMG QSSDESFEEL DDDNSLLLSS PAAMPVYSDS VNTKEIEESE GEGSSQFTEN DGGKDCCDDS THSMENGAAS
301: VDIEAVNNDI EIVQHTEQIS ENIDPILEGP VESVPEGINL GNTETVADEI SPENAPEGIN LGNTETVVDE ISPENAPEGI NLGNTETVVD EISPENAPEG
401: INLGNTETVV DKISSDNAPE GIDPGNTETV VDEISSDNAP EGNDQGNSET VVDEISLENS PEGINLGNTE TVVDEISPEN APEGINLGNT ETVVDEISPE
501: NAPEGINLGN TETVVDEISP ENAPEGINLG NTETVVDEIS PENAPEGINL GNTETVVDEI SPENVDIRHL SMDAEDQSIE VLNFENDDQT ELSNLSVDTE
601: DQASRNSTFK DSDETDVIEV MPDSPKLEAE PVFDEEVDHN LISESNESES LLPSDENLPS LSLEEERKED VENTEIMEVY DHEVVEDKYS EVLDSSKEAT
701: PAAAELILSS GATLLQYPSK AFAGGHEAYF IACGKWLGVA DAVGSWSLEG SDPGVYAQEL MQNSESIVSQ CDTDSINDPK QVLNLSVSKT DSPGSSTVLI
801: AHFDGKVLHV ANIGDSGFII VRNGSVYRKS SPMLHEFNLP IQIEKGDDPS QLLEEYKIEL DEGDIIVTAT DALFDNLYDQ EIVSIVSRSL EADKSPQEIA
901: EILATRVQQV GSSASGRSPF ADAAQAAGYV GYTGGKRDDV AVIVSVVQKV IVSNDN

Best Arabidopsis Sequence Match ( AT4G33500.1 )
(BLAST)

001: MADHLILSLQ APPFLIFPCS LHRSWRFPGG IRYSVPEFRL SSQLQLANSI SPSKSSASSS SPPENSAPEK FDLVSSTQLK DGSHVFRFGD ASEIEKYLEA
101: EEKARCVEVE TQNAKIAEEA SEVSRKQKKL VSSIIETSTE KEETAAPSDL SNVIKIKDRK RVRSPTKKKK ETVNVSRSED KIDAKSASVS NLSSIVSVAE
201: AIPISSTEEE AVVEKEITAK SYNVEPLSSE AMKKVSVNKI GDCETNGYQE NRMEVQARPS LSTQQEITPV STIEIDDNLD VTEKPIEAEE NLVAEPTATD
301: DLSPDELLST SEATHRSVDE IAQKPVIDTS EENLLNTFEA EENPVVEPTA TAAVSSDELI STSEATRHSV DEIAQKPIID TSEKNPMETF VEPEAVHSSV
401: DESTEKLVVV TSDVENDGEN VASTTEDEIT VRDTITDSGS ISNNDDTKVE DLQLPVPETA SLEPIKAASG REELVSKAFY LDSGFASLQS PFKALAGRED
501: AYFISHHNWI GIADGVSQWS FEGINKGMYA QELMSNCEKI ISNETAKISD PVQVLHRSVN ETKSSGSSTA LIAHLDNNEL HIANIGDSGF MVIRDGTVLQ
601: NSSPMFHHFC FPLHITQGCD VLKLAEVYHV NLEEGDVVIA ATDGLFDNLY EKEIVSIVCG SLKQSLEPQK IAELVAAKAQ EVGRSKTERT PFADAAKEEG
701: YNGHKGGKLD AVTVIISFVK IVST

Arabidopsis Description

Probable protein phosphatase 2C 62 [Source:UniProtKB/Swiss-Prot;Acc:Q93V88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.