CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68984	Canola	plastid	72.48	87.41
CDY72337	Canola	cytosol, peroxisome	36.06	86.12
AT4G33500.1	Thale cress	plastid	53.97	62.85
OQU91878	Sorghum	cytosol	9.73	40.59
HORVU2Hr1G018620.1	Barley	cytosol	6.17	34.9
HORVU1Hr1G064790.1	Barley	cytosol, peroxisome	7.71	34.57
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	13.76	32.4
Os10t0370000-02	Rice	peroxisome	17.56	31.83
HORVU5Hr1G117220.2	Barley	mitochondrion	7.71	29.68
TraesCS1D01G378200.1	Wheat	peroxisome, plastid	16.84	28.74
TraesCS1A01G371600.1	Wheat	peroxisome, plastid	16.73	28.03
TraesCS1B01G391400.1	Wheat	peroxisome, plastid	16.61	27.83
HORVU1Hr1G082540.4	Barley	peroxisome, plastid	16.49	27.8
Os03t0192500-01	Rice	cytosol	18.27	27.07
Zm00001d014291_P001	Maize	plastid	17.56	26.19
TraesCS4D01G267000.1	Wheat	cytosol	16.96	25.86
TraesCS4A01G038300.1	Wheat	cytosol	16.73	25.5
TraesCS4B01G267400.1	Wheat	cytosol	16.37	24.82
CDY02041	Canola	plastid	8.66	24.25
CDY10717	Canola	plastid	8.66	24.25
KXG39979	Sorghum	cytosol	16.84	23.87
KRH10513	Soybean	mitochondrion, plastid	21.71	23.52
VIT_12s0055g01130.t01	Wine grape	plastid	21.12	23.06
CDY60192	Canola	mitochondrion	12.69	22.91
CDY40532	Canola	mitochondrion	12.69	22.81
CDY53852	Canola	plastid	10.68	22.0
CDY30759	Canola	plastid	10.44	21.46
GSMUA_Achr2P22130_001	Banana	plastid	18.98	20.89
PGSC0003DMT400032725	Potato	nucleus	21.95	19.35
GSMUA_Achr6P10470_001	Banana	nucleus	19.57	18.35
Solyc01g105020.2.1	Tomato	nucleus, plastid	21.59	17.32

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	GO:A0A078CE11	EnsemblPlants:CDX75361
ProteinID:CDX75361	ProteinID:CDX75361.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	EnsemblPlantsGene:GSBRNA2T00121241001
InterPro:IPR001932	InterPro:IPR036457	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR12320	PANTHER:PTHR12320:SF9	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EE08BA	SEG:seg

Description

BnaA01g03410D

Coordinates

chrLK031804:-:793871..798266

Molecular Weight (calculated)

92355.1 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.348

Length

843 amino acids

Sequence
(BLAST)

001: MADPLILSLQ PPPFLIFSSS SLNRRWGLLR SGIRFSVPEF RLSSQLQLSN STSPSQSSSS STAPEKLDLV SSTLLKDGSH VFRFGDATEA ERYLESEEKA
101: RCLELEKKQR GKIAEEGSPK EKSAVKRKTV KSSTETVSEK EEKAVHASLS SVIKIKDRKR VRSPVKKKKE TSSTVDVLGS GDEVEAKVAN SIVSVAEAIP
201: TSSTGDKTNE NVEPLSSEVM EKVSVNEIRD CETNGYNQLT ESRVEEQAGP GSSSSEHDSQ LNDLKEVIKV STVELDENLE EMEDLMKTFE AEENLVVEPT
301: ATVELDVSPD ELVAVSPDEN LVVEPTATVA VTPDELAAVS PDELVSTSEA TKHSVEETAE TPVIDTSEVV SSNSKSLSSF NSYRRKKTSE SVFATTTLIS
401: FQFFILIKAN EGENVSSTIE DEVAVIDSKN DNGSISKTVN DTNDEDLQLP APETASRQLI EVALDREELV SKSFYLESGS ASLQNPNKFL NSYIIWVLHR
501: SVNETKSSGS STALIAHLSN NELHIANIGD SGFMVVRNRT VLQKSSPMFH HFCFPLHITR GDDILKLAEV YHVNLEEGDV VITASDGLFD NLYEKEIVSI
601: VCRLLEQGLE PQLVAAKAQE VGRSETERTP FGDAAKEEGL DGYRGVYEHP VMSNCEKIIS DETAEICDPV QVLHRSVNET KSSGSSTALI AHLTNNELHI
701: ANIGDSGFMV VRNRTVLQKS SPMFHHFCFP LHITQGDDVL KLAEVYHVNL EVGDVVITAT DGLFDNLYEK EIVSIVCRLL EQGLEPQQRI AELVAAKAQE
801: VGRSETERTP FGDAAKEEGH DGYRGGKLDA VTVIVSLVKT VSI

Best Arabidopsis Sequence Match ( AT4G33500.1 )
(BLAST)

001: MADHLILSLQ APPFLIFPCS LHRSWRFPGG IRYSVPEFRL SSQLQLANSI SPSKSSASSS SPPENSAPEK FDLVSSTQLK DGSHVFRFGD ASEIEKYLEA
101: EEKARCVEVE TQNAKIAEEA SEVSRKQKKL VSSIIETSTE KEETAAPSDL SNVIKIKDRK RVRSPTKKKK ETVNVSRSED KIDAKSASVS NLSSIVSVAE
201: AIPISSTEEE AVVEKEITAK SYNVEPLSSE AMKKVSVNKI GDCETNGYQE NRMEVQARPS LSTQQEITPV STIEIDDNLD VTEKPIEAEE NLVAEPTATD
301: DLSPDELLST SEATHRSVDE IAQKPVIDTS EENLLNTFEA EENPVVEPTA TAAVSSDELI STSEATRHSV DEIAQKPIID TSEKNPMETF VEPEAVHSSV
401: DESTEKLVVV TSDVENDGEN VASTTEDEIT VRDTITDSGS ISNNDDTKVE DLQLPVPETA SLEPIKAASG REELVSKAFY LDSGFASLQS PFKALAGRED
501: AYFISHHNWI GIADGVSQWS FEGINKGMYA QELMSNCEKI ISNETAKISD PVQVLHRSVN ETKSSGSSTA LIAHLDNNEL HIANIGDSGF MVIRDGTVLQ
601: NSSPMFHHFC FPLHITQGCD VLKLAEVYHV NLEEGDVVIA ATDGLFDNLY EKEIVSIVCG SLKQSLEPQK IAELVAAKAQ EVGRSKTERT PFADAAKEEG
701: YNGHKGGKLD AVTVIISFVK IVST

Arabidopsis Description

Probable protein phosphatase 2C 62 [Source:UniProtKB/Swiss-Prot;Acc:Q93V88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.