Factsheet for VIT_12s0055g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G064790.1	Barley	cytosol, peroxisome	13.73	56.38
OQU91878	Sorghum	cytosol	14.12	53.96
HORVU5Hr1G117220.2	Barley	mitochondrion	14.51	51.14
HORVU2Hr1G018620.1	Barley	cytosol	9.59	49.66
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	22.67	48.88
Os10t0370000-02	Rice	peroxisome	25.52	42.37
TraesCS1A01G371600.1	Wheat	peroxisome, plastid	27.59	42.35
TraesCS1D01G378200.1	Wheat	peroxisome, plastid	26.68	41.7
CDY72337	Canola	cytosol, peroxisome	19.04	41.64
TraesCS1B01G391400.1	Wheat	peroxisome, plastid	26.3	40.36
HORVU1Hr1G082540.4	Barley	peroxisome, plastid	25.78	39.8
Zm00001d014291_P001	Maize	plastid	28.76	39.29
TraesCS4A01G038300.1	Wheat	cytosol	27.2	37.97
TraesCS4D01G267000.1	Wheat	cytosol	27.07	37.79
Os03t0192500-01	Rice	cytosol	27.59	37.43
TraesCS4B01G267400.1	Wheat	cytosol	26.68	37.05
KXG39979	Sorghum	cytosol	27.72	35.97
GSMUA_Achr2P22130_001	Banana	plastid	33.81	34.07
VIT_08s0007g05820.t01	Wine grape	cytosol	10.75	33.74
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	11.14	33.2
KRH10513	Soybean	mitochondrion, plastid	32.12	31.88
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	8.94	29.87
AT4G33500.1	Thale cress	plastid	27.2	29.01
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	8.29	27.95
CDX68984	Canola	plastid	25.13	27.75
GSMUA_Achr6P10470_001	Banana	nucleus	31.48	27.03
VIT_06s0004g07360.t01	Wine grape	plastid	10.75	26.69
VIT_04s0023g01400.t01	Wine grape	plastid	12.95	26.39
Bra011448.1-P	Field mustard	plastid	25.26	24.56
PGSC0003DMT400032725	Potato	nucleus	30.31	24.48
Solyc01g105020.2.1	Tomato	nucleus, plastid	29.53	21.69
CDX75361	Canola	plastid	23.06	21.12
VIT_18s0001g12160.t01	Wine grape	extracellular	13.86	20.62

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100262272	wikigene:100262272	Gene3D:3.60.40.10	MapMan:35.1
EMBL:AM423804	ProteinID:CAN64454	ProteinID:CAN64454.1	ProteinID:CBI20067	ProteinID:CBI20067.3	UniProt:D7STF3
EMBL:FN595228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	InterPro:IPR001932
InterPro:IPR036457	EntrezGene:LOC100262272	wikigene:LOC100262272	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF9	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0001BE19DF	ArrayExpress:VIT_12s0055g01130	EnsemblPlantsGene:VIT_12s0055g01130	EnsemblPlants:VIT_12s0055g01130.t01	RefSeq:XP_002262917	RefSeq:XP_002262917.1
RefSeq:XP_010657605.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:14752218..14778740

Molecular Weight (calculated)

84073.1 Da

IEP (calculated)

4.036

GRAVY (calculated)

-0.317

Length

772 amino acids

Sequence
(BLAST)

001: MAELSLYAFS WRLSSFHTLL IPRHASLKPS HVLRNQRPPS HFSSFLSYCS STPTPSHSDD DEFGLLSSTD CSDGSILFRF GYASEIAGRV ELEGAEGLAE
101: VEKASKCVES EVVEESKLFG GDDGVVDEEF YDTRKNEKTS LWDSEHRIVS GEVINDVGDE IVLCSEESDS NVVEAVKNSR IELEDKIVLC RESDNNVVED
201: GKDRRIGPED EIALSKEHSD VPESDSNVVQ AVYDSEIGQE DEVALHREHI DDIENDTTVV AAIIDSRIGM EERLLAESGL DIQSSDSFDR VVRLETEITV
301: NSEKNAVEED KGQFLKPVGV SELDNGFNIE NSSPEEDFEG HVENGVSTLA VVLESEVGPD SELDCASEEI FEEKSEGELM ISVACSEPHS VVEVVNSFGS
401: SESQEENLKI KDMHLSTYAD AELSHVTDEV GHEGDMIKVR PVCAVVGPEP VLNEETSHGS VEESADAHGT ENSIPLKDIA PSSNLEAETT EEDVQSCDAI
501: EESGTKAVEL KLVETTLNGE EILMTGLALS SGAALLPHPS KALTGGEDAY FVAFQNWFGV ADGVGQWSLE GINGGLYARE VMDNCEEIVF KCKGIPITNP
601: REILNRSVAE AQSPGLSTVL VAYFNGQVLR VANIGDTGFL IIRHGAVFQR SSPMVYEFNF PLRIEKGDDP SELIEEYKID LDEGDVIITA TDGLFDNIYE
701: PEIISIVSKS LQANLKPKEI AELLAMRAQE VGRSSSTRSP FADAAKAAGY GGYTGGKLDD VTVIVSSVQK RT

Best Arabidopsis Sequence Match ( AT4G33500.1 )
(BLAST)

001: MADHLILSLQ APPFLIFPCS LHRSWRFPGG IRYSVPEFRL SSQLQLANSI SPSKSSASSS SPPENSAPEK FDLVSSTQLK DGSHVFRFGD ASEIEKYLEA
101: EEKARCVEVE TQNAKIAEEA SEVSRKQKKL VSSIIETSTE KEETAAPSDL SNVIKIKDRK RVRSPTKKKK ETVNVSRSED KIDAKSASVS NLSSIVSVAE
201: AIPISSTEEE AVVEKEITAK SYNVEPLSSE AMKKVSVNKI GDCETNGYQE NRMEVQARPS LSTQQEITPV STIEIDDNLD VTEKPIEAEE NLVAEPTATD
301: DLSPDELLST SEATHRSVDE IAQKPVIDTS EENLLNTFEA EENPVVEPTA TAAVSSDELI STSEATRHSV DEIAQKPIID TSEKNPMETF VEPEAVHSSV
401: DESTEKLVVV TSDVENDGEN VASTTEDEIT VRDTITDSGS ISNNDDTKVE DLQLPVPETA SLEPIKAASG REELVSKAFY LDSGFASLQS PFKALAGRED
501: AYFISHHNWI GIADGVSQWS FEGINKGMYA QELMSNCEKI ISNETAKISD PVQVLHRSVN ETKSSGSSTA LIAHLDNNEL HIANIGDSGF MVIRDGTVLQ
601: NSSPMFHHFC FPLHITQGCD VLKLAEVYHV NLEEGDVVIA ATDGLFDNLY EKEIVSIVCG SLKQSLEPQK IAELVAAKAQ EVGRSKTERT PFADAAKEEG
701: YNGHKGGKLD AVTVIISFVK IVST

Arabidopsis Description

Probable protein phosphatase 2C 62 [Source:UniProtKB/Swiss-Prot;Acc:Q93V88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.