CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72337	Canola	cytosol, peroxisome	45.92	90.93
CDX75361	Canola	plastid	87.41	72.48
AT4G33500.1	Thale cress	plastid	68.67	66.3
OQU91878	Sorghum	cytosol	12.45	43.07
HORVU1Hr1G064790.1	Barley	cytosol, peroxisome	11.3	42.02
Zm00001d048203_P002	Maize	nucleus, peroxisome, plastid	18.88	36.87
HORVU5Hr1G117220.2	Barley	mitochondrion	11.16	35.62
Os10t0370000-02	Rice	peroxisome	23.18	34.84
HORVU2Hr1G018620.1	Barley	cytosol	7.15	33.56
TraesCS1D01G378200.1	Wheat	peroxisome, plastid	22.03	31.17
TraesCS1B01G391400.1	Wheat	peroxisome, plastid	22.32	31.01
TraesCS1A01G371600.1	Wheat	peroxisome, plastid	22.17	30.82
HORVU1Hr1G082540.4	Barley	peroxisome, plastid	21.75	30.4
Os03t0192500-01	Rice	cytosol	23.89	29.35
Zm00001d014291_P001	Maize	plastid	23.61	29.2
TraesCS4D01G267000.1	Wheat	cytosol	22.46	28.39
TraesCS4A01G038300.1	Wheat	cytosol	22.17	28.03
TraesCS4B01G267400.1	Wheat	cytosol	21.6	27.16
KXG39979	Sorghum	cytosol	23.03	27.06
CDY02041	Canola	plastid	11.59	26.91
CDY10717	Canola	plastid	11.59	26.91
VIT_12s0055g01130.t01	Wine grape	plastid	27.75	25.13
KRH10513	Soybean	mitochondrion, plastid	27.32	24.55
CDY60192	Canola	mitochondrion	16.17	24.2
CDY40532	Canola	mitochondrion	16.17	24.09
CDY53852	Canola	plastid	14.02	23.96
CDY30759	Canola	plastid	13.73	23.41
GSMUA_Achr2P22130_001	Banana	plastid	24.32	22.19
PGSC0003DMT400032725	Potato	nucleus	27.75	20.29
GSMUA_Achr6P10470_001	Banana	nucleus	25.61	19.91
Solyc01g105020.2.1	Tomato	nucleus, plastid	27.47	18.27

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	GO:A0A078BYH2	EnsemblPlants:CDX68984
ProteinID:CDX68984	ProteinID:CDX68984.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	EnsemblPlantsGene:GSBRNA2T00130733001
InterPro:IPR001932	InterPro:IPR036457	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746
PANTHER:PTHR12320	PANTHER:PTHR12320:SF9	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EE1630
SEG:seg	:	:	:	:	:

Description

BnaC01g04690D

Coordinates

chrLK031789:-:2290146..2293803

Molecular Weight (calculated)

76113.6 Da

IEP (calculated)

4.203

GRAVY (calculated)

-0.358

Length

699 amino acids

Sequence
(BLAST)

001: MADPLMVLSL QPPPFLIFSS SLNRRWGLSR SGIRFSVPEF RLSSQLQLSN STSPSQSSSS STAPEKLDLV SSTQLKDGSH VFRFGDASEV ERYLESEEKA
101: RCLELEKKQS AKIGEEGEKS VVKKKPVKSS TEIVSEKEEG AAAPARLSSV IKIKDRKRVR SPVKKKKETP IPVDVLGSED EVEAKVANSI VSVAEAIPTS
201: STEEKTSEDV EPLSSEVMGK VSVNEIRDCE TNGYNQITES RVEEQAGPGS STTQHDSQLN DLKEVIKVST VELDENLEEM EDLMKTFEAE ENLVVEPTAT
301: VELDVSPDEL VVVSPDENLV VEPTATVELD ASPDELVLVV EPTATVAVTP DELAAVSPDE LVSTSEATKH SVEETAETPV IDTSEVANEG ENVSSTIEDE
401: VAVIDSKNDN GSISKTVNDT NDEDLQLPAP ETASRQLIEV ALDREETVSK AFYLESGFAS FQNPNKALTG REDAYFISDN NWLGIADGVS QWSFEGISEG
501: EYAQELMSNC QKIISAETAE ICDDPVHVLH RSVNETKSSG SSTALIAHLS NNELQIANIG DSGFMVVRNR TVLQKSSPIF HHFCFPLHIT RGDDVLKLAE
601: VYHVNLEVGD VVITATDGLF DNLYEKEIVS IVCRLLEQGL EPQQRIAELV AAKAQEVGRS ETERTPFADA AKEEGHDGYR GGKLDAVTVI VSLVKTVSI

Best Arabidopsis Sequence Match ( AT4G33500.1 )
(BLAST)

001: MADHLILSLQ APPFLIFPCS LHRSWRFPGG IRYSVPEFRL SSQLQLANSI SPSKSSASSS SPPENSAPEK FDLVSSTQLK DGSHVFRFGD ASEIEKYLEA
101: EEKARCVEVE TQNAKIAEEA SEVSRKQKKL VSSIIETSTE KEETAAPSDL SNVIKIKDRK RVRSPTKKKK ETVNVSRSED KIDAKSASVS NLSSIVSVAE
201: AIPISSTEEE AVVEKEITAK SYNVEPLSSE AMKKVSVNKI GDCETNGYQE NRMEVQARPS LSTQQEITPV STIEIDDNLD VTEKPIEAEE NLVAEPTATD
301: DLSPDELLST SEATHRSVDE IAQKPVIDTS EENLLNTFEA EENPVVEPTA TAAVSSDELI STSEATRHSV DEIAQKPIID TSEKNPMETF VEPEAVHSSV
401: DESTEKLVVV TSDVENDGEN VASTTEDEIT VRDTITDSGS ISNNDDTKVE DLQLPVPETA SLEPIKAASG REELVSKAFY LDSGFASLQS PFKALAGRED
501: AYFISHHNWI GIADGVSQWS FEGINKGMYA QELMSNCEKI ISNETAKISD PVQVLHRSVN ETKSSGSSTA LIAHLDNNEL HIANIGDSGF MVIRDGTVLQ
601: NSSPMFHHFC FPLHITQGCD VLKLAEVYHV NLEEGDVVIA ATDGLFDNLY EKEIVSIVCG SLKQSLEPQK IAELVAAKAQ EVGRSKTERT PFADAAKEEG
701: YNGHKGGKLD AVTVIISFVK IVST

Arabidopsis Description

Probable protein phosphatase 2C 62 [Source:UniProtKB/Swiss-Prot;Acc:Q93V88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.