Factsheet for VIT_08s0007g05820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	58.94	55.98
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	36.59	51.14
PGSC0003DMT400096525	Potato	mitochondrion	33.74	45.11
PGSC0003DMT400021083	Potato	cytosol	55.69	43.63
Solyc10g079180.2.1	Tomato	cytoskeleton, cytosol, peroxisome	54.47	42.14
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	23.17	41.91
PGSC0003DMT400087322	Potato	cytosol	47.15	41.43
Solyc07g064390.1.1	Tomato	cytosol	46.34	40.71
Solyc01g081000.2.1	Tomato	cytosol	50.41	39.12
PGSC0003DMT400030602	Potato	cytosol	13.41	38.82
PGSC0003DMT400004514	Potato	nucleus	50.41	38.75
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	35.77	38.43
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	35.77	38.1
Solyc04g025640.1.1	Tomato	cytosol	13.82	37.36
PGSC0003DMT400049848	Potato	cytosol	45.94	36.22
Solyc12g026410.1.1	Tomato	cytosol	38.62	31.56
VIT_04s0023g01400.t01	Wine grape	plastid	47.15	30.61
Solyc09g010590.1.1	Tomato	nucleus	20.73	28.33
VIT_06s0004g07360.t01	Wine grape	plastid	33.33	26.37
GSMUA_Achr5P10960_001	Banana	cytosol	47.15	22.66
VIT_18s0001g12160.t01	Wine grape	extracellular	47.56	22.54
VIT_12s0055g01130.t01	Wine grape	plastid	33.74	10.75

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100248710	wikigene:100248710	Gene3D:3.60.40.10	MapMan:35.1
ProteinID:CCB55293	ProteinID:CCB55293.1	UniProt:F6HLN7	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100248710	wikigene:LOC100248710	PFAM:PF07228	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF14	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI0001983DBA	ArrayExpress:VIT_08s0007g05820	EnsemblPlantsGene:VIT_08s0007g05820	EnsemblPlants:VIT_08s0007g05820.t01	RefSeq:XP_002274456
RefSeq:XP_002274456.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:19726893..19727835

Molecular Weight (calculated)

27081.3 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.318

Length

246 amino acids

Sequence
(BLAST)

001: MNLESYYIPK QNISNPKGED AHFIHKADYQ TIGVADGVGG WTQRGVDEGK YARELMKNCV LALDSENKGV VNPMMVLNEA YFKTKAPGSS TACIITLTRD
101: NYLHVVNVGD SGFMLFRDGE MVYKSPIQQR GFNCPYQLGR SKGSDRPSSA EELKVAVKER DILVVGTDGL FDNMFVSEMK EIIGNVEKEG LTPKELAWTL
201: AELASYNSLD KDGDTPFAQA KRFAGCGQDK GGKVDDITVI VAYIVL

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.