Factsheet for VIT_18s0001g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05820.t01	Wine grape	cytosol	55.98	58.94
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	31.27	46.02
PGSC0003DMT400087322	Potato	cytosol	45.95	42.5
PGSC0003DMT400096525	Potato	mitochondrion	30.12	42.39
Solyc07g064390.1.1	Tomato	cytosol	44.4	41.07
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	20.85	39.71
PGSC0003DMT400021083	Potato	cytosol	47.1	38.85
Solyc04g025640.1.1	Tomato	cytosol	13.51	38.46
Solyc10g079180.2.1	Tomato	cytoskeleton, cytosol, peroxisome	45.56	37.11
PGSC0003DMT400004514	Potato	nucleus	44.79	36.25
VIT_08s0007g08670.t01	Wine grape	mitochondrion, nucleus, peroxisome	32.05	35.93
VIT_17s0000g07010.t01	Wine grape	cytosol, mitochondrion, peroxisome	31.27	35.37
Solyc01g081000.2.1	Tomato	cytosol	43.24	35.33
PGSC0003DMT400030602	Potato	cytosol	11.2	34.12
PGSC0003DMT400049848	Potato	cytosol	39.38	32.69
Solyc12g026410.1.1	Tomato	cytosol	34.75	29.9
VIT_04s0023g01400.t01	Wine grape	plastid	43.24	29.55
VIT_06s0004g07360.t01	Wine grape	plastid	34.36	28.62
Solyc09g010590.1.1	Tomato	nucleus	19.3	27.78
GSMUA_Achr5P10960_001	Banana	cytosol	43.63	22.07
VIT_18s0001g12160.t01	Wine grape	extracellular	43.24	21.58
VIT_12s0055g01130.t01	Wine grape	plastid	33.2	11.14

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100257487	wikigene:100257487	Gene3D:3.60.40.10	MapMan:35.1
ProteinID:CCB45424	ProteinID:CCB45424.1	UniProt:F6H0F2	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100257487	wikigene:LOC100257487	PFAM:PF07228	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF14	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI00015C7E89	ArrayExpress:VIT_18s0001g01220	EnsemblPlantsGene:VIT_18s0001g01220	EnsemblPlants:VIT_18s0001g01220.t01	RefSeq:XP_002284716
RefSeq:XP_002284716.1	RefSeq:XP_002284725	RefSeq:XP_002284725.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:1819434..1820567

Molecular Weight (calculated)

28335.1 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.039

Length

259 amino acids

Sequence
(BLAST)

001: MKILSERSLI MDLGSFYIPD KNKSSTKGDD AYFISKHHQT IGLADGVAGW AEQGIDGGEY ARQLMDNCVT TLYAEEKEIV YPQIVLEKAY SNTNVEGSST
101: ACIITLMKEY LNVVNVGDSG FMLFRNGNMI YKSSIQQYFF NCPYQLGKSS GCDDPSIAKE LIIGVRAGDV VVVGTDGLFD NVFVSEMEVA IRVLRDEGCL
201: KPQLLAKLLA EQALENSLIK SGDSPYTIAA SKEGKFRSGG KPDDITVIVA RIVPPMDIL

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.