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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • plastid 2
  • extracellular 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:extracellular, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g025640.1.1 Tomato cytosol 50.0 74.73
PGSC0003DMT400096525 Potato mitochondrion 75.0 55.43
PGSC0003DMT400087322 Potato cytosol 69.12 33.57
PGSC0003DMT400049861 Potato cytosol, peroxisome, plastid 36.03 27.84
VIT_08s0007g05820.t01 Wine grape cytosol 41.91 23.17
PGSC0003DMT400004514 Potato nucleus 50.74 21.56
VIT_18s0001g01220.t01 Wine grape cytosol, peroxisome, plastid 39.71 20.85
PGSC0003DMT400021083 Potato cytosol 36.76 15.92
PGSC0003DMT400049848 Potato cytosol 35.29 15.38
PGSC0003DMT400002811 Potato plastid 35.29 12.7
PGSC0003DMT400036150 Potato mitochondrion, plastid 34.56 12.6
PGSC0003DMT400036153 Potato mitochondrion, plastid 33.09 12.06
PGSC0003DMT400013180 Potato mitochondrion 33.82 11.7
PGSC0003DMT400052991 Potato plastid 22.06 9.8
GSMUA_Achr5P10960_001 Banana cytosol 34.56 9.18
PGSC0003DMT400039957 Potato mitochondrion 34.56 9.06
PGSC0003DMT400032725 Potato nucleus 29.41 4.18
PGSC0003DMT400030602 Potato cytosol 1.47 2.35
Protein Annotations
EnsemblPlants:PGSC0003DMT400095232EnsemblPlantsGene:PGSC0003DMG400044803Gene3D:3.60.40.10GO:GO:0003674GO:GO:0003824InterPro:IPR001932
InterPro:IPR036457InterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domKEGG:04658+3.1.3.16KEGG:04660+3.1.3.16PANTHER:PTHR12320
PANTHER:PTHR12320:SF14PFscan:PS51746PGSC:PGSC0003DMG400044803SUPFAM:SSF81606UniParc:UPI0002965D4DUniProt:M1DVU8
MapMan:35.1:::::
Description
Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400044803]
Coordinates
chr4:+:24443678..24444088
Molecular Weight (calculated)
15520.6 Da
IEP (calculated)
4.329
GRAVY (calculated)
0.075
Length
136 amino acids
Sequence
(BLAST)
001: MEVLNDAYFN TKCQGSSTTC ILTLMCDIVH TVNLGDSGFV AIRDRVIVYK SKIPQKGFDY PFQLGNGVKF DDSSAIQEIN VTVRTWDVIV MFTDGLFDNV
101: YYTELEKLVR DGLVDLCELG IFWRNCSCGR FIFEEQ
Best Arabidopsis Sequence Match ( AT5G66720.2 )
(BLAST)
001: MSATALSRLN PVSQFGFQRI VAGKSKSFFS NSGQRRLFSD SSRFRQAMAA SGSLPVFGDA CLDDLVTTCS NGLDFTKKRS SGGSFTINCP VASMRLGKRG
101: GMMKNRLVCH YSVVDPLEKS RALFGTLSKS VHTSPMACFS VGPAHELSSL NGGSQESPPT TTTSLKLVSG SCYLPHPEKE ATGGEDAHFI CDEEQAIGVA
201: DGVGGWAEVG VNAGLFSREL MSYSVSAIQE QHKGSSIDPL VVLEKAHSQT KAKGSSTACI IVLKDKGLHA INLGDSGFTV VREGTTVFQS PVQQHGFNFT
301: YQLESGNSAD VPSSGQVFTI DVQSGDVIVA GTDGVYDNLY NEEITGVVVS SVRAGLDPKG TAQKIAELAR QRAVDKKRQS PFATAAQEAG YRYYGGKLDD
401: ITAVVSYVTS S
Arabidopsis Description
Probable protein phosphatase 2C 80 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.