Factsheet for PGSC0003DMT400039957

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089090.1.1	Tomato	mitochondrion	97.69	97.69
PGSC0003DMT400013180	Potato	mitochondrion	56.07	74.05
GSMUA_Achr8P31180_001	Banana	cytosol	22.93	73.46
VIT_18s0001g12160.t01	Wine grape	extracellular	65.9	65.9
PGSC0003DMT400002811	Potato	plastid	46.82	64.29
PGSC0003DMT400036150	Potato	mitochondrion, plastid	44.7	62.2
PGSC0003DMT400036153	Potato	mitochondrion, plastid	43.93	61.13
KRH15248	Soybean	mitochondrion	59.54	61.07
AT4G16580.1	Thale cress	mitochondrion	54.72	60.81
KRH05793	Soybean	mitochondrion	58.96	60.47
CDY60192	Canola	mitochondrion	54.14	60.17
Bra038489.1-P	Field mustard	mitochondrion	54.14	60.17
CDY40532	Canola	mitochondrion	53.76	59.49
GSMUA_Achr6P35080_001	Banana	plastid	52.41	57.63
GSMUA_Achr9P09210_001	Banana	mitochondrion, plastid	51.83	57.23
TraesCS6A01G111100.1	Wheat	mitochondrion	40.85	55.21
TraesCS6D01G099700.1	Wheat	mitochondrion	40.85	54.92
GSMUA_AchrUn_...	Banana	plastid	48.94	53.81
TraesCS6B01G139200.1	Wheat	mitochondrion	40.08	50.98
EER90674	Sorghum	mitochondrion, plastid	45.09	50.21
HORVU6Hr1G019900.1	Barley	plastid	41.23	49.77
Zm00001d013027_P002	Maize	mitochondrion	44.51	49.36
Zm00001d034575_P001	Maize	plastid	43.93	48.93
Os03t0809300-01	Rice	plastid	44.12	47.81
PGSC0003DMT400096525	Potato	mitochondrion	14.64	41.3
PGSC0003DMT400087322	Potato	cytosol	22.16	41.07
PGSC0003DMT400021083	Potato	cytosol	24.28	40.13
PGSC0003DMT400004514	Potato	nucleus	23.7	38.44
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	12.91	38.07
PGSC0003DMT400030602	Potato	cytosol	5.78	35.29
PGSC0003DMT400049848	Potato	cytosol	21.0	34.94
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	9.06	34.56
GSMUA_Achr8P31190_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	21.39	32.46
PGSC0003DMT400052991	Potato	plastid	17.53	29.74
PGSC0003DMT400032725	Potato	nucleus	22.35	12.13

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102595725	Gene3D:3.60.40.10	MapMan:35.1	ProteinID:ABD93536
ProteinID:ABD93536.1	EMBL:DQ423071	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457
UniProt:M1B917	PFAM:PF07228	EnsemblPlantsGene:PGSC0003DMG402015455	PGSC:PGSC0003DMG402015455	EnsemblPlants:PGSC0003DMT400039957	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI000294AF25	RefSeq:XP_006342592.1	RefSeq:XP_006342593.1	RefSeq:XP_006342594.1	RefSeq:XP_006342595.1
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG402015455]

Coordinates

chr12:-:56823808..56829859

Molecular Weight (calculated)

55402.9 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.282

Length

519 amino acids

Sequence
(BLAST)

001: MPSNYLFRLS RAARQGLQKS ISGKESGLQD SVEILVAQGR LLFGNSKCFY SVPFARPTDL NVLVRPGTLA AAQTNLHVVN QKKNISVVGA ISRAVSIPSV
101: SGPAFHICGY HIDRVISDPA KSLSDSDSHK APMEICGSRT SPPGCSSSKM TSRHLNAVLS VNNPITSYSN KSFDNCRKAS MSLRNKNQPN NFLLYGYFAY
201: NVAKRRGNSN LYAGFGLMGF HTSSTASSST GTAHDVSFGN STCGVQLSSS ADSSEQNICI DRTLKLNSGS CYLPHPDKED TGGEDAHFIC SDEQAIGVAD
301: GVGGWADLGI DAGKYARELM SNSVAAIQDE PKGSVDPARV LDKAYTCTKA KGSSTACIIA LTDQGLHAVN LGDSGFIVVR DGSTVFRSPV QQHDFNFTYQ
401: LESGNAGDLP SSGEVFKIPV AQGDVIITGT DGLFDNLYNN DINAIVVHAT RAGLGPQVTA QKIAALARQR AQDKNRQTPF SSAAQEAGFR YYGGKLDDIT
501: VVVSYISSDR NERSNSLKM

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.