Factsheet for PGSC0003DMT400096525

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g025640.1.1	Tomato	cytosol	37.5	75.82
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	55.43	75.0
PGSC0003DMT400087322	Potato	cytosol	77.17	50.71
VIT_08s0007g05820.t01	Wine grape	cytosol	45.11	33.74
PGSC0003DMT400004514	Potato	nucleus	54.89	31.56
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	29.35	30.68
VIT_18s0001g01220.t01	Wine grape	cytosol, peroxisome, plastid	42.39	30.12
PGSC0003DMT400021083	Potato	cytosol	42.93	25.16
PGSC0003DMT400030602	Potato	cytosol	11.41	24.71
PGSC0003DMT400049848	Potato	cytosol	39.13	23.08
PGSC0003DMT400002811	Potato	plastid	41.85	20.37
PGSC0003DMT400036153	Potato	mitochondrion, plastid	39.13	19.3
PGSC0003DMT400013180	Potato	mitochondrion	40.76	19.08
PGSC0003DMT400036150	Potato	mitochondrion, plastid	38.59	19.03
PGSC0003DMT400052991	Potato	plastid	26.63	16.01
PGSC0003DMT400039957	Potato	mitochondrion	41.3	14.64
GSMUA_Achr5P10960_001	Banana	cytosol	40.22	14.45
PGSC0003DMT400032725	Potato	nucleus	33.7	6.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400096525	EnsemblPlantsGene:PGSC0003DMG400046096	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR12320
PANTHER:PTHR12320:SF14	PFscan:PS51746	PGSC:PGSC0003DMG400046096	SUPFAM:SSF81606	UniParc:UPI000295F9B4	UniProt:M1DYM7
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400046096]

Coordinates

chr4:+:24241414..24241968

Molecular Weight (calculated)

20718.6 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.219

Length

184 amino acids

Sequence
(BLAST)

001: GEDAHFICIE EEIIGVADVV DGWAKTGIDS GEYSRQLVRN AELSIHKKKD QKNKIQPLEV LNESYFNTKC QGSSTTCILT LMCNNVHAVN LGDSGFVGTR
101: HGVIVYKLEI QQKGFDYPFQ LGNDVKFDDS SVVQEIKVTV RTCDVIVMST DGLFDNVHNI ELEKLVRDGL MDLQELEIFW RNCS

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.