Factsheet for PGSC0003DMT400036153

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036150	Potato	mitochondrion, plastid	96.25	96.25
Solyc07g064310.1.1	Tomato	mitochondrion	94.91	94.91
PGSC0003DMT400002811	Potato	plastid	72.65	71.69
PGSC0003DMT400013180	Potato	mitochondrion	47.45	45.04
PGSC0003DMT400039957	Potato	mitochondrion	61.13	43.93
PGSC0003DMT400096525	Potato	mitochondrion	19.3	39.13
PGSC0003DMT400087322	Potato	cytosol	29.22	38.93
PGSC0003DMT400049861	Potato	cytosol, peroxisome, plastid	18.23	38.64
PGSC0003DMT400021083	Potato	cytosol	32.17	38.22
PGSC0003DMT400004514	Potato	nucleus	29.76	34.69
PGSC0003DMT400030602	Potato	cytosol	7.77	34.12
PGSC0003DMT400095232	Potato	cytosol, peroxisome, plastid	12.06	33.09
PGSC0003DMT400049848	Potato	cytosol	27.35	32.69
PGSC0003DMT400052991	Potato	plastid	24.66	30.07
PGSC0003DMT400032725	Potato	nucleus	26.54	10.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400036153	EnsemblPlantsGene:PGSC0003DMG402013921	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	PANTHER:PTHR12320
PANTHER:PTHR12320:SF16	PFAM:PF07228	PFscan:PS51746	PGSC:PGSC0003DMG402013921	SMART:SM00331	SMART:SM00332
SUPFAM:SSF81606	UniParc:UPI000295A30C	UniProt:M1B3C6	MapMan:35.1	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG402013921]

Coordinates

chr7:-:54573763..54578477

Molecular Weight (calculated)

39970.3 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.155

Length

373 amino acids

Sequence
(BLAST)

001: MAVCGSRTHI GHFVGNMTAR RLQCSLSVKS CTVSYNKRGF QNVSKANISL GNKGRPNNFM LYQYFTTNVA KRRTNLHPHK GFGLEGFHNL SHECFFSGTA
101: SASNVSSDNS KGTEQVVDVV NSSEAKIPLQ LDSGSFYLPH PAKAKTGGED AHFICTLTPA IGVADGVGGW ADLGIDAGLY ARELMSHSLS AIKDEPKGSV
201: DLIRVLEKAY VRTKAKGSST ACIVALTEGG LYAVNLGDSG FMLVRNGCAA FKSPSQQHGF NFPYQLDCSN TGDSPSSTMV FKITALPGDV LIVSTDGLFD
301: NLYDEYISGV VFQAMEAGLG PQMTAQRIAE LAQLRAMDHT KSSPFSDGAR EAGFDYHGGK LDDITVVVSY ITE

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.