CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER91098
EES05647
EES07255
EES07517

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66720.1	EES05647	AT3G27960.1	21798944
AT5G66720.1	EER88112	AT3G47620.1	21798944
AT5G66720.1	EES07255	AT3G47620.1	21798944
AT5G66720.1	EES07517	AT3G48150.1	21798944
AT5G66720.1	EER91098	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034575_P001	Maize	plastid	92.7	92.7
Zm00001d013027_P002	Maize	mitochondrion	92.49	92.09
Os03t0809300-01	Rice	plastid	80.47	78.29
TraesCS5D01G472400.1	Wheat	plastid	78.11	75.68
TraesCS5B01G470500.1	Wheat	plastid	77.47	75.37
TraesCS5A01G460700.1	Wheat	plastid	73.82	74.62
GSMUA_Achr8P31180_001	Banana	cytosol	24.46	70.37
VIT_04s0023g01400.t01	Wine grape	plastid	45.06	55.41
Solyc04g080090.2.1	Tomato	mitochondrion, plastid	43.78	53.83
KRH69944	Soybean	cytosol, plastid	41.85	53.57
GSMUA_Achr6P35080_001	Banana	plastid	53.86	53.18
PGSC0003DMT400013180	Potato	mitochondrion	44.42	52.67
GSMUA_Achr9P09210_001	Banana	mitochondrion, plastid	52.36	51.91
KRH08301	Soybean	cytosol	42.06	51.85
GSMUA_AchrUn_...	Banana	plastid	48.28	47.67
AT5G66720.1	Thale cress	plastid	42.27	47.58
KRH28642	Soybean	mitochondrion	42.06	46.34
VIT_18s0001g12160.t01	Wine grape	extracellular	51.07	45.86
Bra038489.1-P	Field mustard	mitochondrion	45.92	45.82
CDY60192	Canola	mitochondrion	45.92	45.82
CDY40532	Canola	mitochondrion	45.92	45.63
AT4G16580.1	Thale cress	mitochondrion	45.71	45.61
Solyc12g089090.1.1	Tomato	mitochondrion	50.64	45.47
CDY53852	Canola	plastid	39.7	45.23
HORVU6Hr1G019900.1	Barley	plastid	41.63	45.12
PGSC0003DMT400039957	Potato	mitochondrion	50.21	45.09
Bra012095.1-P	Field mustard	plastid	39.48	44.99
CDY30759	Canola	plastid	39.48	44.88
KRH15248	Soybean	mitochondrion	48.71	44.86
KRH76843	Soybean	plastid	42.27	44.67
KRH05793	Soybean	mitochondrion	48.5	44.66
OQU91878	Sorghum	cytosol	14.59	33.66
OQU85364	Sorghum	cytosol	22.75	31.64
KXG31802	Sorghum	plastid	20.39	29.32
EES07195	Sorghum	cytosol	20.82	29.13
EES05885	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.03	28.49
GSMUA_Achr8P31190_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.53	26.61
KXG39979	Sorghum	cytosol	24.46	19.16

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	EntrezGene:8057093	UniProt:C5WW24
EnsemblPlants:EER90674	ProteinID:EER90674	ProteinID:EER90674.1	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932
InterPro:IPR036457	PFAM:PF07228	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320
PANTHER:PTHR12320:SF16	SMART:SM00331	SMART:SM00332	EnsemblPlantsGene:SORBI_3001G043800	SUPFAM:SSF81606	unigene:Sbi.6381
UniParc:UPI0001A8201F	RefSeq:XP_002463676.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3280534..3286055

Molecular Weight (calculated)

49563.5 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.215

Length

466 amino acids

Sequence
(BLAST)

001: MLAGYGGGGR GVHFSSHKDL LLARGSRSFL FGNTWFLLST YPARLLHTTD RRAPAAFFAA INRAPGVRSH CAGQGLLQRG GIVMAACGYA LRRAELGAAK
101: RQQPDKDPSA GTRASRIAAV GSLGSAARPD VSFRYRGVES CKKIGVSLKC REPWGNRAFW TNAAGPGWKL SFAVEPWTKD FSTSCAAPYS AGATEHQLSL
201: DEKMDNSSVA SDGKSPVSEK LKLLSGSCYL PHPAKEATGG EDAHFISIDE HVIGVADGVG GWADLGVDAG LYAKELMRNS LSAIKDEPEG TIDPTRVLEK
301: AYMSTKARGS STACIITLKD QGIHAVNLGD SGFVVVRDGR TVLRSPSQQH DFNFTYQLES GGGSDLPSSA QVFHFPVAPG DVIVAGTDGL FDNLYNNEIS
401: GVIVEALRVG LEPQIAAQKI AALARQRATD KNRQSPFASA AQEAGYRYYG GKLDDITVVV SYVKSA

Best Arabidopsis Sequence Match ( AT4G16580.1 )
(BLAST)

001: MLPVRESLQK QVKILIGLGN LGFGGYRGLY TRFTNPNGFL EPASSDLLLI NERRNLSVIG AVSRTFSVPS VSGPAFQVCG YHIDLLLSDP CKSMASLGSK
101: SLFVDRHSAS LVSKRFTGGM VSGDGPNRGR ISMRLRGKDH NEKSTICAYF AYRGAKRWIY LNQQRRGMGF RGLHSSLSNR LSAGNAPDVS LDNSVTDEQV
201: RDSSDSVAAK LCTKPLKLVS GSCYLPHPDK EATGGEDAHF ICAEEQALGV ADGVGGWAEL GIDAGYYSRE LMSNSVNAIQ DEPKGSIDPA RVLEKAHTCT
301: KSQGSSTACI IALTNQGLHA INLGDSGFMV VREGHTVFRS PVQQHDFNFT YQLESGRNGD LPSSGQVFTV AVAPGDVIIA GTDGLFDNLY NNEITAIVVH
401: AVRANIDPQV TAQKIAALAR QRAQDKNRQT PFSTAAQDAG FRYYGGKLDD ITVVVSYVAA SKEEGKH

Arabidopsis Description

Probable protein phosphatase 2C 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUK9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.