CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91168
EER93246
EER94121
EER97037
EES07800
EES11384
EES14755
EES19881
KXG24018
KXG40202
OQU78269
OQU84894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	OQU78269	AT1G45145.1	21798944
AT4G19700.1	EES11384	AT2G24570.1	21798944
AT4G19700.1	EES14755	AT2G24570.1	21798944
AT4G19700.1	OQU84894	AT2G24570.1	21798944
AT4G19700.1	EER94121	AT2G33210.1	21798944
AT4G19700.1	KXG40202	AT2G33210.1	21798944
AT4G19700.1	EER97037	AT2G43370.1	21798944
AT4G19700.1	EES19881	AT3G13860.1	21798944
AT4G19700.1	EER93246	AT4G02770.1	21798944
AT4G19700.1	EES11384	AT4G31550.1	21798944
AT4G19700.1	EES14755	AT4G31550.1	21798944
AT4G19700.1	OQU84894	AT4G31550.1	21798944
AT4G19700.1	EES07800	AT5G08330.1	21798944
AT4G19700.1	EER91168	AT5G38640.1	21798944
AT4G19700.1	KXG24018	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	71.27	76.67
Zm00001d033419_P001	Maize	plastid	45.07	57.14
TraesCS3D01G441300.1	Wheat	mitochondrion	41.97	51.38
TraesCS3B01G484600.1	Wheat	cytosol	39.44	50.91
GSMUA_Achr7P00850_001	Banana	plastid	32.96	50.87
TraesCS3A01G448500.1	Wheat	mitochondrion	41.97	50.85
TraesCS3D01G441000.1	Wheat	mitochondrion	40.56	49.66
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	41.69	48.84
GSMUA_Achr2P13160_001	Banana	plastid	33.8	48.58
HORVU4Hr1G003180.3	Barley	mitochondrion	41.97	48.53
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	41.97	48.53
TraesCS4A01G293700.1	Wheat	mitochondrion	40.85	47.08
TraesCS7D01G431300.1	Wheat	mitochondrion	40.85	46.33
TraesCS7B01G340500.1	Wheat	mitochondrion	40.85	46.03
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	40.56	45.86
TraesCS4B01G019600.1	Wheat	mitochondrion	40.0	45.81
GSMUA_Achr4P28300_001	Banana	nucleus	30.99	45.64
TraesCS7A01G442100.1	Wheat	mitochondrion	40.28	45.54
TraesCS7B01G340600.1	Wheat	mitochondrion	40.0	45.51
GSMUA_Achr4P23050_001	Banana	nucleus	23.94	45.21
TraesCS7D01G431200.1	Wheat	mitochondrion	39.15	45.13
GSMUA_Achr5P02100_001	Banana	plastid	30.99	45.08
TraesCS7B01G340700.1	Wheat	mitochondrion	39.44	44.87
HORVU7Hr1G100540.2	Barley	mitochondrion	38.31	44.74
TraesCS7A01G441900.1	Wheat	mitochondrion	39.72	44.62
TraesCS7A01G442300.1	Wheat	mitochondrion	39.72	44.48
GSMUA_Achr4P32070_001	Banana	nucleus	34.65	43.01
HORVU6Hr1G021880.1	Barley	plastid	31.55	42.91
HORVU6Hr1G021960.1	Barley	plastid	31.55	42.91
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	28.73	42.68
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	32.11	42.07
GSMUA_Achr6P31690_001	Banana	nucleus	34.08	40.6
TraesCS6A01G120700.1	Wheat	nucleus	29.3	39.54
GSMUA_Achr9P09830_001	Banana	nucleus	35.21	38.94
TraesCS6B01G149100.1	Wheat	nucleus	28.73	38.78
TraesCS6D01G110700.1	Wheat	nucleus	28.45	38.4
KRH43767	Soybean	nucleus	26.2	36.76
CDY21311	Canola	cytosol	24.23	36.75
CDX94520	Canola	cytosol	24.23	36.75
CDY07541	Canola	cytosol	24.23	36.75
CDY09318	Canola	cytosol	24.23	36.75
VIT_19s0027g00740.t01	Wine grape	nucleus	31.27	35.92
AT5G45100.1	Thale cress	cytosol	29.58	35.71
CDX88507	Canola	nucleus	29.86	35.57
Bra035092.1-P	Field mustard	nucleus	31.55	35.44
CDX87407	Canola	nucleus	31.55	35.44
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	29.3	35.14
CDY26402	Canola	cytosol	29.3	35.14
KRH50476	Soybean	cytosol, nucleus, plastid	31.55	35.0
VIT_10s0042g01070.t01	Wine grape	nucleus	29.58	34.65
PGSC0003DMT400062617	Potato	nucleus	28.73	34.0
KRH36722	Soybean	nucleus	29.58	33.87
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	30.7	33.75
KRG89416	Soybean	nucleus	29.58	33.44
KRH11729	Soybean	nucleus	29.3	33.23
AT4G19700.1	Thale cress	cytosol	27.89	32.57
CDY71192	Canola	cytosol	25.63	32.5
CDY01615	Canola	cytosol	27.89	32.46
CDY71607	Canola	cytosol	27.61	32.03
Bra012532.1-P	Field mustard	nucleus	27.61	32.03
Bra001477.1-P	Field mustard	nucleus	30.42	31.76
Bra013423.1-P	Field mustard	nucleus	26.48	31.76
Bra039354.1-P	Field mustard	cytosol	29.01	31.69
CDY43390	Canola	cytosol	29.01	31.69
AT3G12920.1	Thale cress	nucleus	29.86	31.64
CDX79294	Canola	nucleus	27.04	31.58
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	24.79	31.54
CDY13070	Canola	cytosol	24.79	31.54
CDX82568	Canola	nucleus	30.14	31.47
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	24.79	31.21
CDY18062	Canola	cytosol	24.79	31.21
CDY46345	Canola	cytosol	24.79	31.21
CDY24237	Canola	nucleus	28.45	31.17
CDY51918	Canola	cytosol	25.07	31.01
Solyc02g031710.2.1	Tomato	nucleus	27.04	30.97
CDY64561	Canola	nucleus	29.58	30.88
KRH13682	Soybean	nucleus	29.01	30.56
AT1G79110.1	Thale cress	nucleus	30.7	30.45
Bra034718.1-P	Field mustard	nucleus	28.73	30.27
Solyc02g069180.2.1	Tomato	plastid	23.94	30.04
EES10713	Sorghum	cytosol	28.73	29.31
EES12084	Sorghum	cytosol, nucleus, plastid	23.1	27.99
OQU81469	Sorghum	cytosol	25.92	27.3
EES05161	Sorghum	plastid	25.35	26.55
OQU85032	Sorghum	cytosol	27.04	25.74
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	25.07	25.57
OQU83596	Sorghum	cytosol, extracellular	21.69	24.92
OQU83597	Sorghum	cytosol	22.82	23.89
OQU81471	Sorghum	mitochondrion	24.79	23.28
CDY23552	Canola	cytosol	14.08	23.04
EES05709	Sorghum	nucleus	21.97	22.1
EER95135	Sorghum	plastid	19.44	20.47
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	17.46	16.99

Protein Annotations

EnsemblPlants:EER91098	EnsemblPlantsGene:SORBI_3001G141600	EntrezGene:8056736	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:EER91098	ProteinID:EER91098.1	RefSeq:XP_002464100.1
SEG:seg	unigene:Sbi.20442	UniParc:UPI0001A81FB3	UniProt:C5WQ98	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:+:11376156..11378622

Molecular Weight (calculated)

36505.9 Da

IEP (calculated)

6.811

GRAVY (calculated)

-0.171

Length

355 amino acids

Sequence
(BLAST)

001: MAVESHRLLL AQQGQGQKQF TNAAAAGWPW TSTGDEARCA TAAARPSHHH QQQAAAAAFQ FQQQAASCVG VGLPAPPPPV SSSAAPYAAA GGQVLVGDAA
101: ESGVTFGGGA GAAQHQEVVA MAMAAATAPR KRKRVVEQGQ APPVLEIGGA ADVAAHFHQQ LVDVDRLVLQ HTGKMWAELT EQRRRHARQV VATVEAAAAK
201: RLRAKEEEIQ RMGRLNWALE ERVKSLYVEA QVWRDLAQSN EAAANALRGE LQQALDAQQA RLCGGGGADD AESCCCGEND VAAGAGAGAA GAEDGETSSS
301: PAYGRRTCAV CGEGAAEVLL LPCRHLCACA PCAGAARACP ACGCAKNGSV CVNFS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.