Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43390 | Canola | cytosol | 78.21 | 80.62 |
| Bra039354.1-P | Field mustard | cytosol | 78.21 | 80.62 |
| CDY24237 | Canola | nucleus | 77.91 | 80.56 |
| Bra001477.1-P | Field mustard | nucleus | 78.81 | 77.65 |
| CDX82568 | Canola | nucleus | 77.91 | 76.76 |
| Bra034718.1-P | Field mustard | nucleus | 77.01 | 76.56 |
| CDY64561 | Canola | nucleus | 77.61 | 76.47 |
| CDY23552 | Canola | cytosol | 47.76 | 73.73 |
| KRH43767 | Soybean | nucleus | 37.01 | 49.01 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 44.78 | 48.54 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 31.04 | 45.22 |
| KRH13682 | Soybean | nucleus | 44.48 | 44.21 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 37.61 | 44.06 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 31.94 | 43.85 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 31.64 | 42.91 |
| AT5G45100.1 | Thale cress | cytosol | 36.12 | 41.16 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 22.99 | 40.96 |
| AT1G79110.1 | Thale cress | nucleus | 42.99 | 40.22 |
| AT4G19700.1 | Thale cress | cytosol | 36.42 | 40.13 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 34.93 | 39.26 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 27.46 | 38.17 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.63 | 36.14 |
| TraesCS3D01G441000.1 | Wheat | mitochondrion | 28.66 | 33.1 |
| TraesCS3D01G441300.1 | Wheat | mitochondrion | 28.66 | 33.1 |
| TraesCS7D01G431300.1 | Wheat | mitochondrion | 30.45 | 32.59 |
| TraesCS3B01G484600.1 | Wheat | cytosol | 26.57 | 32.36 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 29.55 | 32.25 |
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 28.96 | 32.01 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 27.76 | 31.74 |
| HORVU7Hr1G100520.1 | Barley | cytosol, mitochondrion | 28.96 | 31.6 |
| HORVU7Hr1G100540.2 | Barley | mitochondrion | 28.36 | 31.25 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 30.45 | 30.91 |
| TraesCS4A01G293700.1 | Wheat | mitochondrion | 28.36 | 30.84 |
| TraesCS7B01G340600.1 | Wheat | mitochondrion | 28.66 | 30.77 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 28.36 | 30.65 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 28.66 | 30.57 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 21.79 | 30.54 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 28.66 | 30.28 |
| EER91098 | Sorghum | nucleus | 31.64 | 29.86 |
| TraesCS7B01G340500.1 | Wheat | mitochondrion | 28.06 | 29.84 |
| TraesCS7B01G340700.1 | Wheat | mitochondrion | 27.76 | 29.81 |
| TraesCS7D01G431100.1 | Wheat | mitochondrion, nucleus | 27.16 | 28.98 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 27.16 | 28.8 |
| HORVU6Hr1G021960.1 | Barley | plastid | 22.39 | 28.74 |
| HORVU6Hr1G021880.1 | Barley | plastid | 22.39 | 28.74 |
| TraesCS7D01G431200.1 | Wheat | mitochondrion | 26.27 | 28.57 |
| TraesCS6D01G073600.1 | Wheat | cytosol, nucleus, plastid | 22.99 | 28.41 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 22.09 | 28.14 |
| TraesCS6D01G110700.1 | Wheat | nucleus | 22.09 | 28.14 |
| TraesCS6B01G149100.1 | Wheat | nucleus | 21.79 | 27.76 |
| Zm00001d033419_P001 | Maize | plastid | 21.49 | 25.71 |
| AT4G35070.1 | Thale cress | cytosol | 18.21 | 23.02 |
| AT5G47050.1 | Thale cress | nucleus | 19.7 | 22.0 |
| AT1G32740.1 | Thale cress | nucleus | 20.0 | 21.47 |
| AT1G45976.1 | Thale cress | cytosol | 20.6 | 21.23 |
| AT1G10650.1 | Thale cress | nucleus | 21.19 | 20.94 |
| AT4G17680.1 | Thale cress | nucleus | 19.4 | 20.7 |
| AT1G60610.4 | Thale cress | nucleus | 20.9 | 20.59 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:820477 | ProteinID:AEE75262.1 | EMBL:AK118454 | ArrayExpress:AT3G12920 |
| EnsemblPlantsGene:AT3G12920 | RefSeq:AT3G12920 | TAIR:AT3G12920 | RefSeq:AT3G12920-TAIR-G | EnsemblPlants:AT3G12920.1 | TAIR:AT3G12920.1 |
| EMBL:AY088707 | ProteinID:BAB02499.1 | EMBL:BT006236 | InterPro:E3ligase_BOI_like | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043067 | GO:GO:0043161 | GO:GO:0046872 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_566438.1 | PFAM:PF13920 | PIRSF:PIRSF036836 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF7 | UniProt:Q9LDD1 | UniParc:UPI00000AC538 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
Coordinates
chr3:-:4121789..4123582
Molecular Weight (calculated)
37710.9 Da
IEP (calculated)
6.658
GRAVY (calculated)
-0.490
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.