Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024967.1-P | Field mustard | plastid | 63.33 | 76.92 |
| CDY33511 | Canola | nucleus | 76.33 | 75.58 |
| CDX77733 | Canola | nucleus | 75.33 | 75.33 |
| Bra017511.1-P | Field mustard | nucleus | 75.67 | 75.17 |
| CDY43447 | Canola | nucleus | 75.0 | 74.5 |
| CDY37172 | Canola | cytosol | 75.0 | 74.5 |
| CDY51856 | Canola | cytosol | 73.67 | 72.94 |
| Bra022093.1-P | Field mustard | nucleus | 51.67 | 70.45 |
| CDY03162 | Canola | cytosol | 74.67 | 69.57 |
| AT4G17680.1 | Thale cress | nucleus | 58.33 | 55.73 |
| KRH77271 | Soybean | plastid | 50.33 | 46.89 |
| KRH28216 | Soybean | nucleus | 50.67 | 46.2 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 51.0 | 45.4 |
| Solyc06g061020.2.1 | Tomato | nucleus | 49.67 | 45.02 |
| Solyc08g077460.2.1 | Tomato | nucleus | 51.33 | 44.25 |
| PGSC0003DMT400004642 | Potato | nucleus | 50.67 | 43.93 |
| PGSC0003DMT400068387 | Potato | nucleus | 49.0 | 42.98 |
| Solyc08g007120.2.1 | Tomato | nucleus | 46.33 | 41.99 |
| AT1G32740.1 | Thale cress | nucleus | 43.33 | 41.67 |
| KRH04275 | Soybean | nucleus | 49.0 | 41.18 |
| KRH57556 | Soybean | nucleus | 47.0 | 40.29 |
| PGSC0003DMT400052841 | Potato | nucleus | 45.33 | 38.97 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 40.0 | 36.36 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 32.33 | 36.06 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 34.67 | 35.99 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 35.33 | 34.75 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 37.67 | 33.53 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 35.33 | 33.33 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 35.67 | 33.02 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 35.33 | 31.74 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 35.33 | 31.36 |
| Os10t0565500-01 | Rice | nucleus | 36.67 | 31.34 |
| Zm00001d047069_P001 | Maize | cytosol | 34.67 | 31.33 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 34.67 | 30.59 |
| Zm00001d017649_P001 | Maize | plastid | 33.67 | 30.51 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 34.67 | 30.32 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 32.0 | 29.91 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 34.33 | 29.6 |
| EES05709 | Sorghum | nucleus | 34.67 | 29.46 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 31.67 | 29.32 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 32.33 | 28.87 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 31.33 | 28.83 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 33.67 | 28.61 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 31.0 | 28.35 |
| AT1G10650.1 | Thale cress | nucleus | 27.67 | 24.48 |
| AT4G19700.1 | Thale cress | cytosol | 23.67 | 23.36 |
| AT4G35070.1 | Thale cress | cytosol | 20.0 | 22.64 |
| AT1G45976.1 | Thale cress | cytosol | 24.33 | 22.46 |
| AT5G45100.1 | Thale cress | cytosol | 21.67 | 22.11 |
| AT1G79110.1 | Thale cress | nucleus | 24.67 | 20.67 |
| AT1G60610.4 | Thale cress | nucleus | 23.0 | 20.29 |
| AT3G12920.1 | Thale cress | nucleus | 22.0 | 19.7 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:834751 | ProteinID:AED95461.1 | ArrayExpress:AT5G47050 | EnsemblPlantsGene:AT5G47050 |
| RefSeq:AT5G47050 | TAIR:AT5G47050 | RefSeq:AT5G47050-TAIR-G | EnsemblPlants:AT5G47050.1 | TAIR:AT5G47050.1 | EMBL:AY063791 |
| EMBL:AY091288 | Unigene:At.24049 | ProteinID:BAB10244.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_199516.1 | PFAM:PF13920 | PIRSF:PIRSF036836 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF13 | UniProt:Q9FJQ8 | UniParc:UPI0000048C1D | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
Coordinates
chr5:+:19106297..19108348
Molecular Weight (calculated)
33488.5 Da
IEP (calculated)
6.600
GRAVY (calculated)
-0.598
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.