Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 54.17 | 50.15 |
| KRH77271 | Soybean | plastid | 50.32 | 48.76 |
| KRH28216 | Soybean | nucleus | 50.0 | 47.42 |
| PGSC0003DMT400004642 | Potato | nucleus | 52.56 | 47.4 |
| Solyc08g077460.2.1 | Tomato | nucleus | 52.56 | 47.13 |
| Solyc08g007120.2.1 | Tomato | nucleus | 47.76 | 45.02 |
| Solyc06g061020.2.1 | Tomato | nucleus | 47.44 | 44.71 |
| KRH04275 | Soybean | nucleus | 49.68 | 43.42 |
| AT5G47050.1 | Thale cress | nucleus | 41.67 | 43.33 |
| PGSC0003DMT400052841 | Potato | nucleus | 48.4 | 43.27 |
| PGSC0003DMT400068387 | Potato | nucleus | 47.12 | 42.98 |
| KRH57556 | Soybean | nucleus | 48.08 | 42.86 |
| AT4G17680.1 | Thale cress | nucleus | 41.03 | 40.76 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 39.1 | 36.97 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 33.33 | 35.99 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 35.9 | 35.22 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 37.5 | 34.72 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 29.81 | 34.57 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 34.62 | 33.33 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 35.26 | 32.93 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 35.58 | 32.84 |
| Os10t0565500-01 | Rice | nucleus | 36.54 | 32.48 |
| EES05709 | Sorghum | nucleus | 36.22 | 32.01 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 32.69 | 31.78 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 34.62 | 31.76 |
| Zm00001d017649_P001 | Maize | plastid | 33.65 | 31.72 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 34.62 | 31.49 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 32.69 | 31.48 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 30.77 | 31.48 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 35.58 | 31.44 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 34.62 | 31.03 |
| Zm00001d047069_P001 | Maize | cytosol | 33.01 | 31.02 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 32.37 | 30.79 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 31.73 | 30.37 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 32.05 | 29.76 |
| AT4G19700.1 | Thale cress | cytosol | 24.36 | 25.0 |
| AT5G45100.1 | Thale cress | cytosol | 23.4 | 24.83 |
| AT1G10650.1 | Thale cress | nucleus | 26.92 | 24.78 |
| AT1G60610.4 | Thale cress | nucleus | 25.96 | 23.82 |
| AT4G35070.1 | Thale cress | cytosol | 19.87 | 23.4 |
| AT1G45976.1 | Thale cress | cytosol | 24.36 | 23.38 |
| AT1G79110.1 | Thale cress | nucleus | 24.36 | 21.23 |
| AT3G12920.1 | Thale cress | nucleus | 21.47 | 20.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:840168 | ProteinID:AEE31523.1 | ArrayExpress:AT1G32740 | EnsemblPlantsGene:AT1G32740 |
| RefSeq:AT1G32740 | TAIR:AT1G32740 | RefSeq:AT1G32740-TAIR-G | EnsemblPlants:AT1G32740.1 | TAIR:AT1G32740.1 | EMBL:AY086544 |
| ncoils:Coil | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_564408.1 | PFAM:PF13920 |
| PIRSF:PIRSF036836 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 | UniProt:Q8LCK5 | UniParc:UPI000009EA20 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
Coordinates
chr1:+:11844660..11846347
Molecular Weight (calculated)
35236.6 Da
IEP (calculated)
7.192
GRAVY (calculated)
-0.611
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.