Factsheet for VIT_02s0012g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01
VIT_03s0091g00480.t01
VIT_04s0008g05520.t01
VIT_04s0008g05610.t01
VIT_04s0023g03180.t01
VIT_07s0005g01100.t01
VIT_11s0149g00060.t01
VIT_13s0019g04580.t01
VIT_13s0067g02440.t01
VIT_13s0156g00270.t01
VIT_14s0083g00450.t01
VIT_17s0000g03690.t01
VIT_17s0000g06020.t01
VIT_18s0001g05810.t01
VIT_18s0072g00400.t01
VIT_19s0027g00700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	VIT_18s0001g05810.t01	AT1G22840.1	21798944
AT4G17680.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT4G17680.1	VIT_14s0083g00450.t01	AT1G67170.1	21798944
AT4G17680.1	VIT_18s0072g00400.t01	AT1G76760.1	21798944
AT4G17680.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT4G17680.1	VIT_13s0067g02440.t01	AT3G10970.1	21798944
AT4G17680.1	VIT_19s0027g00700.t01	AT3G12930.1	21798944
AT4G17680.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT4G17680.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944
AT4G17680.1	VIT_13s0019g04580.t01	AT3G54826.1	21798944
AT4G17680.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT4G17680.1	VIT_11s0149g00060.t01	AT4G32020.1	21798944
AT4G17680.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT4G17680.1	VIT_04s0008g05520.t01	AT4G32295.1	21798944
AT4G17680.1	VIT_01s0146g00220.t01	AT5G14070.1	21798944
AT4G17680.1	VIT_17s0000g03690.t01	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28216	Soybean	nucleus	64.09	65.65
KRH77271	Soybean	plastid	62.31	65.22
PGSC0003DMT400004642	Potato	nucleus	64.69	63.01
Solyc08g077460.2.1	Tomato	nucleus	64.69	62.64
Solyc06g061020.2.1	Tomato	nucleus	61.42	62.54
KRH04275	Soybean	nucleus	66.17	62.47
PGSC0003DMT400068387	Potato	nucleus	62.02	61.11
KRH57556	Soybean	nucleus	63.2	60.86
Solyc08g007120.2.1	Tomato	nucleus	54.9	55.89
AT1G32740.1	Thale cress	nucleus	50.15	54.17
PGSC0003DMT400052841	Potato	nucleus	54.9	53.01
Bra024967.1-P	Field mustard	plastid	37.39	51.01
AT5G47050.1	Thale cress	nucleus	45.4	51.0
GSMUA_Achr2P18250_001	Banana	nucleus	48.96	50.0
CDY33511	Canola	nucleus	43.62	48.51
CDY43447	Canola	nucleus	43.32	48.34
Bra017511.1-P	Field mustard	nucleus	43.32	48.34
CDX77733	Canola	nucleus	43.03	48.33
AT4G17680.1	Thale cress	nucleus	43.92	47.13
CDY09609	Canola	cytosol	34.42	46.96
CDY51856	Canola	cytosol	41.84	46.53
CDY37172	Canola	cytosol	41.25	46.03
GSMUA_Achr1P00560_001	Banana	nucleus	39.47	46.02
GSMUA_Achr2P12040_001	Banana	plastid	36.2	45.35
CDX90458	Canola	cytosol	40.65	45.07
CDY03162	Canola	cytosol	43.03	45.03
GSMUA_Achr8P14860_001	Banana	nucleus	44.51	44.51
Bra022093.1-P	Field mustard	nucleus	28.19	43.18
GSMUA_Achr4P30100_001	Banana	plastid	38.87	42.95
GSMUA_Achr4P21690_001	Banana	nucleus	40.95	42.59
Os02t0687500-01	Rice	cytosol, nucleus, plastid	39.17	41.51
Os10t0565500-01	Rice	nucleus	40.95	39.32
TraesCS6D01G243000.1	Wheat	cytosol	38.87	39.22
TraesCS1D01G217800.1	Wheat	cytosol	37.09	38.94
TraesCS1A01G215300.1	Wheat	cytosol	37.39	38.89
EES05709	Sorghum	nucleus	40.65	38.81
TraesCS6B01G289500.1	Wheat	nucleus	38.87	38.76
TraesCS1B01G228800.1	Wheat	cytosol	37.09	38.34
Zm00001d047069_P001	Maize	cytosol	37.69	38.25
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	39.47	38.22
HORVU1Hr1G054930.3	Barley	cytosol	37.09	38.11
Zm00001d017649_P001	Maize	plastid	37.39	38.07
TraesCS6A01G262200.1	Wheat	nucleus	38.28	37.94
HORVU6Hr1G066640.4	Barley	nucleus	38.58	37.9
Bra012650.1-P	Field mustard	nucleus	38.87	37.54
Zm00001d051484_P001	Maize	nucleus, plastid	39.17	37.39
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	36.5	36.61
VIT_03s0038g02450.t01	Wine grape	nucleus	19.58	30.56
VIT_19s0027g00740.t01	Wine grape	nucleus	27.3	29.77
VIT_17s0000g08570.t01	Wine grape	nucleus	28.19	28.44
VIT_10s0042g01070.t01	Wine grape	nucleus	24.63	27.39
VIT_01s0127g00360.t01	Wine grape	nucleus	28.19	26.91
VIT_18s0001g14740.t01	Wine grape	cytosol	22.26	26.22
VIT_18s0001g10370.t01	Wine grape	nucleus	20.18	20.73

Protein Annotations

EntrezGene:100265998	wikigene:100265998	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CCB57951	ProteinID:CCB57951.1
ncoils:Coil	InterPro:E3ligase_BOI_like	UniProt:F6HTE1	EMBL:FN596247	InterPro:IPR001841	InterPro:IPR013083
EntrezGene:LOC100265998	wikigene:LOC100265998	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647
PANTHER:PTHR42647:SF13	TIGR:TC65362	UniParc:UPI0001982CBB	ArrayExpress:VIT_02s0012g00290	EnsemblPlantsGene:VIT_02s0012g00290	EnsemblPlants:VIT_02s0012g00290.t01
unigene:Vvi.17395	RefSeq:XP_002279666	RefSeq:XP_002279666.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr2:-:6021594..6023729

Molecular Weight (calculated)

36786.6 Da

IEP (calculated)

7.371

GRAVY (calculated)

-0.466

Length

337 amino acids

Sequence
(BLAST)

001: MAVQAQYPSN VLLLNRGVQD GKIDCSLQPQ PGGFLDQSHM LFNNGVVANS RKRGREVFGN TNTGGVVAPT VNSFPLQPQP SQLIDLSVLH NHQPNVVSTG
101: LRLAFGEQHL QHPQQQQQQQ QNQQQQSAVL SLLSEDFTAQ IKHQRDEIDQ FLRAQGEQLR RTLAEKRQRH YRALLGAAEE SVARRLREKE AEVEKAARCN
201: AELEARAAQL SMEAQVWQAK ARAQEATAAS LQAQLQQAMM SGGGCSQDRR GEEGLGCAVG AEGGGCSGQA EDAESAYIDP ERVKSSGPMC KACRKRVASV
301: VLLPCRHFCI CTQCDGVVQA CPLCLSLRDS SVEVFLS

Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)

001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.