Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035166 | Potato | plastid | 32.81 | 46.67 |
| KRH20110 | Soybean | plastid | 43.75 | 46.41 |
| KRH03546 | Soybean | plastid | 43.75 | 46.15 |
| PGSC0003DMT400076868 | Potato | plastid | 38.54 | 44.85 |
| Solyc08g041860.1.1 | Tomato | plastid | 38.02 | 43.98 |
| AT4G32020.1 | Thale cress | plastid | 32.81 | 34.81 |
| CDX72341 | Canola | plastid | 30.21 | 32.22 |
| CDY13469 | Canola | plastid | 29.69 | 31.84 |
| Bra023967.1-P | Field mustard | plastid | 29.69 | 31.49 |
| AT2G25250.1 | Thale cress | plastid | 25.0 | 30.97 |
| CDX75213 | Canola | plastid | 30.73 | 30.1 |
| Bra011315.1-P | Field mustard | plastid | 30.73 | 29.06 |
| CDX68810 | Canola | plastid | 29.69 | 27.27 |
Protein Annotations
| ArrayExpress:VIT_11s0149g00060 | EMBL:FN595516 | EnsemblPlants:VIT_11s0149g00060.t01 | EnsemblPlantsGene:VIT_11s0149g00060 | EntrezGene:104880696 | PANTHER:PTHR33670 |
| PANTHER:PTHR33670:SF3 | PFAM:PF15365 | ProteinID:CCB49944 | ProteinID:CCB49944.1 | RefSeq:XP_010656551.1 | SEG:seg |
| TIGR:TC52281 | TIGR:TC54182 | unigene:Vvi.7213 | UniParc:UPI000210906D | UniProt:F6HCJ9 | MapMan:35.2 |
Description
No Description!
Coordinates
chr11:-:6748194..6749345
Molecular Weight (calculated)
21345.6 Da
IEP (calculated)
11.066
GRAVY (calculated)
-0.702
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVVLRSQD CLRDRFHPET LTYSPLLKSR PNPNSNPNPN GTRARRRKRS PLGFQDNGND RVPDRYGSMV VKSPARNLVM GQVTILKRGE ALSLPKNRGL
101: GNDRKGRARR EADLDLMLGS TDRLGPEPEM VQKEIRVSES KVVDGLYAGS AFFSSPPPSS LPLPLFFTKK DGSPSNDAAT SDLRRLLRLD FL
101: GNDRKGRARR EADLDLMLGS TDRLGPEPEM VQKEIRVSES KVVDGLYAGS AFFSSPPPSS LPLPLFFTKK DGSPSNDAAT SDLRRLLRLD FL
001: MATAMSYSSQ NHRFEHQTLI HRNPKPRLCR NSSTAPRRRK QSPTVVKSPA ANPNLVMEQV KILKRGETLS AFNKNKENIS SDDTRRPVLK MIKDVDLIVS
101: ATNRIGPEPE ILMKQIGALG LQSFAGANCS LSPPPSCVPI PCFLGTKNNL LV
101: ATNRIGPEPE ILMKQIGALG LQSFAGANCS LSPPPSCVPI PCFLGTKNNL LV
Arabidopsis Description
At4g02040 [Source:UniProtKB/TrEMBL;Acc:O04248]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.