CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75213	Canola	plastid	90.91	96.94
Bra011315.1-P	Field mustard	plastid	92.82	95.57
AT4G32020.1	Thale cress	plastid	64.11	74.03
CDX72341	Canola	plastid	61.72	71.67
CDY13469	Canola	plastid	61.24	71.51
AT2G25250.1	Thale cress	plastid	36.84	49.68
PGSC0003DMT400035166	Potato	plastid	23.45	36.3
PGSC0003DMT400076868	Potato	plastid	27.27	34.55
KRH20110	Soybean	plastid	28.71	33.15
Solyc08g041860.1.1	Tomato	plastid	26.32	33.13
KRH03546	Soybean	plastid	26.79	30.77
VIT_11s0149g00060.t01	Wine grape	nucleus	27.27	29.69

Protein Annotations

EnsemblPlants:CDX68810	EnsemblPlantsGene:GSBRNA2T00130529001	PANTHER:PTHR33670	PANTHER:PTHR33670:SF3	ProteinID:CDX68810	ProteinID:CDX68810.1
SEG:seg	UniParc:UPI0004EE7F40	MapMan:35.2	:	:	:

Description

BnaC01g06430D

Coordinates

chrLK031789:+:1395874..1397038

Molecular Weight (calculated)

23104.4 Da

IEP (calculated)

10.855

GRAVY (calculated)

-0.523

Length

209 amino acids

Sequence
(BLAST)

001: MGVAVLNPQD CIKQPFSHMK YPRNHTACTN RHQKKPVPNR TRRSPPRNQT TRSPPKAPPP PPQRAAVSSY VPKGTVEKSP TKNVVVGQVR ILKRGEEIPK
101: KTLELVVEKP DLLVGKPDLL VGKPDLVVEK PDLVSTQRIG PDPCLIPSQI RLSDRKSKKT VVPFYAGPVT MTSPPPSDVP LPAFFTTKKD ATNHIIKLLR
201: LDVACMSLQ

Best Arabidopsis Sequence Match ( AT4G32020.1 )
(BLAST)

001: MGVAVLNPQD CLKDPFSHMK QHRNPSACPN RQKKTVSNNR TRRSPPRSQS SRSSSPPVAP PLPPPRAAVS AFVPKGTLKK SLSNTVAVSQ VRILKRGEEI
101: PKETSDLVVE MSDLGSTRRI GPDPGLIPGQ IRLSGRKSKS APFYAGPVTM TSPPPSDVPL PAFFTKKATN DLIRILRLDI A

Arabidopsis Description

AT4g32020/F10N7_170 [Source:UniProtKB/TrEMBL;Acc:O49389]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.