Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076868 | Potato | plastid | 71.85 | 58.79 |
| KRH03546 | Soybean | plastid | 45.93 | 34.07 |
| KRH20110 | Soybean | plastid | 45.19 | 33.7 |
| VIT_11s0149g00060.t01 | Wine grape | nucleus | 46.67 | 32.81 |
| AT2G25250.1 | Thale cress | plastid | 34.07 | 29.68 |
| AT4G32020.1 | Thale cress | plastid | 39.26 | 29.28 |
| CDX72341 | Canola | plastid | 37.04 | 27.78 |
| CDY13469 | Canola | plastid | 35.56 | 26.82 |
| Bra023967.1-P | Field mustard | plastid | 35.56 | 26.52 |
| CDX75213 | Canola | plastid | 37.78 | 26.02 |
| Bra011315.1-P | Field mustard | plastid | 37.78 | 25.12 |
| CDX68810 | Canola | plastid | 36.3 | 23.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035166 | EnsemblPlantsGene:PGSC0003DMG401013517 | EntrezGene:102585406 | PANTHER:PTHR33670 | PANTHER:PTHR33670:SF3 | PGSC:PGSC0003DMG401013517 |
| RefSeq:XP_006356422.1 | SEG:seg | UniParc:UPI000295B6FD | UniProt:M1B1X3 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401013517]
Coordinates
chr5:-:8978257..8978664
Molecular Weight (calculated)
15150.2 Da
IEP (calculated)
10.782
GRAVY (calculated)
-0.676
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVSILQPQ DVLKYHVSYR RNSTCNPLPN PNPKNKRRKR SPEKNGSAKF STVKILKRGQ VLKVVKENKG EDLVLSTTDT VLKHTRIAEF YAGWGFSSSP
101: PPSSLPVPAF FKKKSEDNLD ATSDLRRLLR LDLAD
101: PPSSLPVPAF FKKKSEDNLD ATSDLRRLLR LDLAD
001: MGVAVLHPHD SIINHFSTNT SPPLRHKKPI TNRRRRSPSS HQSQISHPPP SPHNHTNHVR ILKRGEDINV KIPIEKPDLK SNRQIGSDPM KISTPIRISN
101: RKSMPALFYA GPVTSTSPPP SEVPLPAFFA NKTVAGFKPT DATNDLIKIL RLDIA
101: RKSMPALFYA GPVTSTSPPP SEVPLPAFFA NKTVAGFKPT DATNDLIKIL RLDIA
Arabidopsis Description
At2g25250 [Source:UniProtKB/TrEMBL;Acc:Q9SIR8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.