Factsheet for Bra012650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra003197.1-P
Bra004207.1-P
Bra005553.1-P
Bra006236.1-P
Bra007101.1-P
Bra008559.1-P
Bra008782.1-P
Bra011315.1-P
Bra011328.1-P
Bra011335.1-P
Bra012346.1-P
Bra014221.1-P
Bra015721.1-P
Bra018126.1-P
Bra023448.1-P
Bra023956.1-P
Bra023967.1-P
Bra024541.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P
Bra029883.1-P
Bra034018.1-P
Bra034716.1-P
Bra036832.1-P
Bra039355.1-P
Bra039652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	Bra012346.1-P	AT1G22840.1	21798944
AT4G17680.1	Bra024541.1-P	AT1G22840.1	21798944
AT4G17680.1	Bra014221.1-P	AT1G49850.1	21798944
AT4G17680.1	Bra039652.1-P	AT1G49850.1	21798944
AT4G17680.1	Bra004207.1-P	AT1G67170.1	21798944
AT4G17680.1	Bra034018.1-P	AT1G67170.1	21798944
AT4G17680.1	Bra015721.1-P	AT1G76760.1	21798944
AT4G17680.1	Bra005553.1-P	AT2G32840.1	21798944
AT4G17680.1	Bra029883.1-P	AT3G10970.1	21798944
AT4G17680.1	Bra034716.1-P	AT3G12930.1	21798944
AT4G17680.1	Bra039355.1-P	AT3G12930.1	21798944
AT4G17680.1	Bra018126.1-P	AT3G47620.1	21798944
AT4G17680.1	Bra036832.1-P	AT3G51180.1	21798944
AT4G17680.1	Bra003197.1-P	AT3G54826.1	21798944
AT4G17680.1	Bra007101.1-P	AT3G54826.1	21798944
AT4G17680.1	Bra000891.1-P	AT4G02150.1	21798944
AT4G17680.1	Bra008559.1-P	AT4G02150.1	21798944
AT4G17680.1	Bra011315.1-P	AT4G32020.1	21798944
AT4G17680.1	Bra023967.1-P	AT4G32020.1	21798944
AT4G17680.1	Bra011328.1-P	AT4G32190.1	21798944
AT4G17680.1	Bra011335.1-P	AT4G32295.1	21798944
AT4G17680.1	Bra023956.1-P	AT4G32295.1	21798944
AT4G17680.1	Bra006236.1-P	AT5G14070.1	21798944
AT4G17680.1	Bra008782.1-P	AT5G14070.1	21798944
AT4G17680.1	Bra023448.1-P	AT5G14070.1	21798944
AT4G17680.1	Bra025431.1-P	AT5G38420.1	21798944
AT4G17680.1	Bra028174.1-P	AT5G38420.1	21798944
AT4G17680.1	Bra028181.1-P	AT5G38420.1	21798944
AT4G17680.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90458	Canola	cytosol	84.81	97.37
CDY09609	Canola	cytosol	64.47	91.09
AT4G17680.1	Thale cress	nucleus	60.74	67.52
Bra024967.1-P	Field mustard	plastid	39.54	55.87
Bra017511.1-P	Field mustard	nucleus	47.56	54.97
Bra022093.1-P	Field mustard	nucleus	32.95	52.27
KRH28216	Soybean	nucleus	36.96	39.21
KRH77271	Soybean	plastid	36.1	39.13
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	37.54	38.87
PGSC0003DMT400004642	Potato	nucleus	36.96	37.28
Solyc08g077460.2.1	Tomato	nucleus	36.96	37.07
KRH04275	Soybean	nucleus	36.1	35.29
KRH57556	Soybean	nucleus	35.24	35.14
Solyc06g061020.2.1	Tomato	nucleus	33.24	35.05
Solyc08g007120.2.1	Tomato	nucleus	32.95	34.74
PGSC0003DMT400068387	Potato	nucleus	32.66	33.33
GSMUA_Achr2P12040_001	Banana	plastid	25.5	33.09
Os02t0687500-01	Rice	cytosol, nucleus, plastid	29.8	32.7
GSMUA_Achr2P18250_001	Banana	nucleus	30.66	32.42
GSMUA_Achr1P00560_001	Banana	nucleus	26.65	32.18
GSMUA_Achr4P30100_001	Banana	plastid	27.22	31.15
PGSC0003DMT400052841	Potato	nucleus	30.95	30.95
TraesCS1A01G215300.1	Wheat	cytosol	28.37	30.56
TraesCS1D01G217800.1	Wheat	cytosol	27.79	30.22
TraesCS1B01G228800.1	Wheat	cytosol	28.08	30.06
HORVU1Hr1G054930.3	Barley	cytosol	27.79	29.57
TraesCS6D01G243000.1	Wheat	cytosol	28.08	29.34
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	27.79	28.87
GSMUA_Achr8P14860_001	Banana	nucleus	27.79	28.78
TraesCS6B01G289500.1	Wheat	nucleus	27.79	28.7
TraesCS6A01G262200.1	Wheat	nucleus	27.51	28.24
Os10t0565500-01	Rice	nucleus	28.37	28.21
Zm00001d047069_P001	Maize	cytosol	26.65	28.01
HORVU6Hr1G066640.4	Barley	nucleus	27.51	27.99
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	27.79	27.87
Zm00001d017649_P001	Maize	plastid	26.36	27.79
GSMUA_Achr4P21690_001	Banana	nucleus	25.5	27.47
Bra040255.1-P	Field mustard	nucleus	17.77	27.07
EES05709	Sorghum	nucleus	26.93	26.63
Zm00001d051484_P001	Maize	nucleus, plastid	26.65	26.35
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	15.76	24.89
Bra034672.1-P	Field mustard	cytosol	16.33	22.71
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	15.19	22.55
Bra019910.1-P	Field mustard	nucleus, plastid	19.48	22.37
Bra035092.1-P	Field mustard	nucleus	18.91	20.89
Bra018428.1-P	Field mustard	nucleus	20.06	20.71
Bra014051.1-P	Field mustard	nucleus	18.05	20.26
Bra031495.1-P	Field mustard	nucleus	18.91	20.18
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	16.91	19.93
Bra013423.1-P	Field mustard	nucleus	16.91	19.93
Bra039354.1-P	Field mustard	cytosol	18.05	19.38
Bra012532.1-P	Field mustard	nucleus	16.91	19.28
Bra034718.1-P	Field mustard	nucleus	17.77	18.4
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	14.61	18.28
Bra001477.1-P	Field mustard	nucleus	17.19	17.65
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	14.04	17.38

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra012650	EnsemblPlants:Bra012650.1	EnsemblPlants:Bra012650.1-P
ncoils:Coil	InterPro:E3ligase_BOI_like	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950
GO:GO:0008150	GO:GO:0031347	InterPro:IPR001841	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013083
UniProt:M4D840	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PFscan:PS50293	PANTHER:PTHR42647
PANTHER:PTHR42647:SF13	SMART:SM00184	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025409A8
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT4G17680 (E=1e-091) | protein binding / zinc ion binding

Coordinates

chrA03:-:22914903..22926793

Molecular Weight (calculated)

38999.3 Da

IEP (calculated)

7.780

GRAVY (calculated)

-0.618

Length

349 amino acids

Sequence
(BLAST)

001: MAVRTHHPSR FLFVNNNGQE DNNCSLQPQD THFTLIKAGV VDSRKRSRDV SSVGFIQFSS VAAQMNPPPP KPPQVIGMSE LLQSHNRKTL NMVSTGLLRS
101: SHEQSQNGEQ LLSSSSMLPG DLAGESKRQR DELDSFIQTR GEELQRKLAL YGESRYVELL YAAEELAGRR VREKEAELEK ATRRHAELEA RAAQLTEEAR
201: TWQLRAATRE AEVSSLHAHI QKVIASQATA EKQRTIGGET EDAESVFVDP ERIELIGPCC SICRRNSATV MALPCRHLVL CKGCDGGGDV RVCPICLAVK
301: NFGNKLFKEQ EYHDAVRHHT EAIQRNPKEP TTRPRGMQDQ GIKNILTDL

Best Arabidopsis Sequence Match ( AT4G17680.1 )
(BLAST)

001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.