Factsheet for Bra039355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000872.1-P
Bra003232.1-P
Bra005396.1-P
Bra007228.1-P
Bra007233.1-P
Bra014704.1-P
Bra018539.1-P
Bra021928.1-P
Bra022989.1-P
Bra036256.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12930.1	Bra005396.1-P	AT2G34750.1	21798944
AT3G12930.1	Bra021928.1-P	AT2G34750.1	21798944
AT3G12930.1	Bra022989.1-P	AT2G34750.1	21798944
AT3G12930.1	Bra003232.1-P	AT3G56220.1	21798944
AT3G12930.1	Bra007228.1-P	AT3G56220.1	21798944
AT3G12930.1	Bra014704.1-P	AT3G56220.1	21798944
AT3G12930.1	Bra007233.1-P	AT3G56270.1	21798944
AT3G12930.1	Bra000872.1-P	AT4G02590.1	21798944
AT3G12930.1	Bra018539.1-P	AT4G02590.1	21798944
AT3G12930.1	Bra036256.1-P	AT4G02590.1	21798944
AT3G12930.1	Bra000638.1-P	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24236	Canola	plastid	95.73	94.51
CDY43388	Canola	extracellular	68.8	83.42
AT3G12930.1	Thale cress	plastid	82.91	81.51
Bra034716.1-P	Field mustard	plastid	82.05	81.01
VIT_19s0027g00700.t01	Wine grape	plastid	55.13	58.9
KRH13673	Soybean	plastid	60.26	58.75
GSMUA_Achr4P09860_001	Banana	plastid	51.28	54.55
Solyc07g066460.2.1	Tomato	plastid	52.99	53.22
PGSC0003DMT400056899	Potato	plastid	52.56	52.79
KRH43792	Soybean	plastid	59.83	51.85
EER99115	Sorghum	plastid	47.01	48.67
Os09t0493600-01	Rice	plastid	45.73	47.56
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	44.87	46.26
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	44.44	46.22
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	44.02	45.78
Zm00001d020971_P002	Maize	plastid	45.3	44.92

Protein Annotations

EnsemblPlants:Bra039355.1	EnsemblPlants:Bra039355.1-P	EnsemblPlantsGene:Bra039355	Gene3D:3.30.460.10	HAMAP:MF_01477	InterPro:Iojap/RsfS/C7orf30
PANTHER:PTHR21043	PANTHER:PTHR21043:SF1	PFAM:PF02410	SEG:seg	SUPFAM:SSF81301	TIGRFAMs:TIGR00090
UniParc:UPI000253E8CB	UniProt:M4FE34	MapMan:35.1	:	:	:

Description

AT3G12930 (E=5e-107) | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Iojap-related protein (InterPro:IPR004394); Has 2517 Blast hits to 2517 proteins in 833 species: Archae - 0; Bacteria - 1551; Metazoa - 22; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).

Coordinates

chrScaffold000164:+:95931..97373

Molecular Weight (calculated)

25882.5 Da

IEP (calculated)

4.556

GRAVY (calculated)

-0.228

Length

234 amino acids

Sequence
(BLAST)

001: MATSTGLNVA GALLSGDFRL PSLSSQTRRE SSSMFCLSNG DLSAPYTCSW RQSRDKALTN SKSFAVGIEA EDGFLSNVSE DSDEMFDDLF NKYGKVVYKS
101: DDLKSPTAEV DDDAESLAFA VEMAKVASEV KAGDIKVLFV KPLVYWTRFF IIATAFSRPQ IDAIGSRMRD MAEKKYGKVA NGDVKPNAWT LLDFGDVVIH
201: LFLPPQRTFY NLEDFYGNAM SVPLPFEDQA PPRS

Best Arabidopsis Sequence Match ( AT3G12930.1 )
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Arabidopsis Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.