Factsheet for VIT_19s0027g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g01700.t01
VIT_04s0044g01800.t01
VIT_07s0141g00220.t01
VIT_13s0067g02280.t01
VIT_13s0067g02400.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12930.1	VIT_04s0044g01700.t01	AT2G34750.1	21798944
AT3G12930.1	VIT_04s0044g01800.t01	AT2G34750.1	21798944
AT3G12930.1	VIT_13s0067g02280.t01	AT3G56220.1	21798944
AT3G12930.1	VIT_13s0067g02400.t01	AT3G56270.1	21798944
AT3G12930.1	VIT_07s0141g00220.t01	AT4G02590.1	21798944
AT3G12930.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43388	Canola	extracellular	52.97	60.1
AT3G12930.1	Thale cress	plastid	60.27	55.46
Bra039355.1-P	Field mustard	plastid	58.9	55.13
Solyc07g066460.2.1	Tomato	plastid	57.99	54.51
KRH13673	Soybean	plastid	59.36	54.17
CDY24236	Canola	plastid	58.45	54.01
PGSC0003DMT400056899	Potato	plastid	56.62	53.22
Bra034716.1-P	Field mustard	plastid	56.62	52.32
GSMUA_Achr4P09860_001	Banana	plastid	52.51	52.27
CDY60119	Canola	plastid	55.71	51.48
CDY23554	Canola	plastid	55.25	51.05
Os09t0493600-01	Rice	plastid	49.77	48.44
KRH43792	Soybean	plastid	58.9	47.78
EER99115	Sorghum	plastid	47.03	45.58
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	45.66	44.44
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	45.21	44.0
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	44.75	43.17
Zm00001d020971_P002	Maize	plastid	46.12	42.8

Protein Annotations

EntrezGene:100245577	wikigene:100245577	Gene3D:3.30.460.10	MapMan:35.1	ProteinID:CBI21770	ProteinID:CBI21770.3
UniProt:D7SWX0	EMBL:FN595234	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0017148	GO:GO:0019538	GO:GO:0043023
GO:GO:0090071	InterPro:Iojap/RsfS/C7orf30	EntrezGene:LOC100245577	wikigene:LOC100245577	HAMAP:MF_01477	PFAM:PF02410
PANTHER:PTHR21043	PANTHER:PTHR21043:SF1	SUPFAM:SSF81301	TIGR:TC69321	TIGRFAMs:TIGR00090	UniParc:UPI0001985704
ArrayExpress:VIT_19s0027g00700	EnsemblPlantsGene:VIT_19s0027g00700	EnsemblPlants:VIT_19s0027g00700.t01	unigene:Vvi.5376	RefSeq:XP_002267512	RefSeq:XP_002267512.1
RefSeq:XP_010644988.1	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:19894744..19903387

Molecular Weight (calculated)

24578.4 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.099

Length

219 amino acids

Sequence
(BLAST)

001: MQASTSLFSC PLPYKSLAAP QLPGECMPFV RPIKLSWSSS LQRPVKFSSV TGLSRDLSMF SSMAFNPNVS EDTDDMYDEL FEKYGKVVLR RGDKKPHSAE
101: VDDDAESLAF AVALAKVASD VKAADIRVLF VKPLVYWTRF FIIATAFSRP QIDAIGSRIR DLAEKQYGKV PSGDSKPNSW TLLDFGDVVI HIFLPQQRAF
201: YNLEEFYANA TLIELPFEN

Best Arabidopsis Sequence Match ( AT3G12930.1 )
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Arabidopsis Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.