Factsheet for Solyc07g066460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082340.2.1
Solyc04g077210.2.1
Solyc06g050350.2.1
Solyc06g050840.2.1
Solyc09g065820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12930.1	Solyc02g082340.2.1	AT2G34750.1	21798944
AT3G12930.1	Solyc06g050840.2.1	AT3G56220.1	21798944
AT3G12930.1	Solyc06g050350.2.1	AT3G56270.1	21798944
AT3G12930.1	Solyc09g065820.2.1	AT4G02590.1	21798944
AT3G12930.1	Solyc04g077210.2.1	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056899	Potato	plastid	96.14	96.14
CDY43388	Canola	extracellular	49.79	60.1
VIT_19s0027g00700.t01	Wine grape	plastid	54.51	57.99
Bra039355.1-P	Field mustard	plastid	53.22	52.99
AT3G12930.1	Thale cress	plastid	53.65	52.52
KRH13673	Soybean	plastid	54.08	52.5
CDY24236	Canola	plastid	53.22	52.32
GSMUA_Achr4P09860_001	Banana	plastid	48.93	51.82
Bra034716.1-P	Field mustard	plastid	52.36	51.48
CDY60119	Canola	plastid	51.5	50.63
CDY23554	Canola	plastid	51.07	50.21
Os09t0493600-01	Rice	plastid	45.49	47.11
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	45.49	47.11
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	45.06	46.67
EER99115	Sorghum	plastid	44.64	46.02
KRH43792	Soybean	plastid	53.22	45.93
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	44.64	45.81
Zm00001d020971_P002	Maize	plastid	43.78	43.22

Protein Annotations

Gene3D:3.30.460.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0017148	GO:GO:0019538	GO:GO:0043023
GO:GO:0090071	InterPro:Iojap/RsfS/C7orf30	UniProt:K4CHX1	HAMAP:MF_01477	PFAM:PF02410	PANTHER:PTHR21043
PANTHER:PTHR21043:SF1	SUPFAM:SSF81301	EnsemblPlantsGene:Solyc07g066460.2	EnsemblPlants:Solyc07g066460.2.1	TIGRFAMs:TIGR00090	UniParc:UPI000276B48F
SEG:seg	:	:	:	:	:

Description

Protein Iojap, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G12930) UniProtKB/Swiss-Prot;Acc:Q9LDY9]

Coordinates

chr7:-:67884801..67888571

Molecular Weight (calculated)

25963.5 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.361

Length

233 amino acids

Sequence
(BLAST)

001: MKVHSCIHPL PSTPSTGILV SAGPAEAKLA ANTRKLYSLT LNSSNYVPFP YKDQKFSRSS STDFSRTAIG SNVSEDTDDM FDDLLRTHGK VVYKRNDQKP
101: ASEEIDDDAE SLSFAMAVAK VASDVKAGDI KVLFVKPLVY WTRFFIIATA FSRPQIDAIG TRVRDMAEEQ YGRVASGDSK PNSWTLLDFG DVVVHLFLPP
201: QREYYNLEEF YGNAASIELP FENQQQLRGP TGY

Best Arabidopsis Sequence Match ( AT3G12930.1 )
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Arabidopsis Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.