CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90950
EER91090
EER92303
EER92305
EER95833
EER97734
KXG20689
KXG36938
KXG37359
OQU77760
OQU78181
OQU88567
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12930.1	KXG20689	AT2G34750.1	21798944
AT3G12930.1	EER92303	AT3G56220.1	21798944
AT3G12930.1	KXG36938	AT3G56220.1	21798944
AT3G12930.1	OQU77760	AT3G56220.1	21798944
AT3G12930.1	EER92305	AT3G56270.1	21798944
AT3G12930.1	EER97734	AT3G56270.1	21798944
AT3G12930.1	OQU78181	AT3G56270.1	21798944
AT3G12930.1	KXG37359	AT4G02590.1	21798944
AT3G12930.1	OQU88567	AT4G02590.1	21798944
AT3G12930.1	EER90950	AT4G08150.1	21798944
AT3G12930.1	EER91090	AT4G08150.1	21798944
AT3G12930.1	EER95833	AT4G08150.1	21798944
AT3G12930.1	OQU90921	AT4G08150.1	21798944
AT3G12930.1	OQU91064	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020971_P002	Maize	plastid	91.15	87.29
Os09t0493600-01	Rice	plastid	72.57	72.89
TraesCS5D01G279000.1	Wheat	mitochondrion, plastid	68.14	68.44
TraesCS5B01G271700.1	Wheat	mitochondrion, plastid	67.7	68.0
TraesCS5A01G271400.1	Wheat	mitochondrion, plastid	68.14	67.84
GSMUA_Achr4P09860_001	Banana	plastid	54.87	56.36
CDY43388	Canola	extracellular	43.81	51.3
AT3G12930.1	Thale cress	plastid	51.33	48.74
VIT_19s0027g00700.t01	Wine grape	plastid	45.58	47.03
Bra039355.1-P	Field mustard	plastid	48.67	47.01
CDY24236	Canola	plastid	48.67	46.41
Bra034716.1-P	Field mustard	plastid	47.35	45.15
KRH13673	Soybean	plastid	47.79	45.0
CDY60119	Canola	plastid	46.9	44.73
Solyc07g066460.2.1	Tomato	plastid	46.02	44.64
PGSC0003DMT400056899	Potato	plastid	46.02	44.64
CDY23554	Canola	plastid	46.46	44.3
KRH43792	Soybean	plastid	47.79	40.0

Protein Annotations

Gene3D:3.30.460.10	MapMan:35.1	EntrezGene:8054746	UniProt:C5X4I8	EnsemblPlants:EER99115	ProteinID:EER99115
ProteinID:EER99115.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0017148	GO:GO:0019538	GO:GO:0043023	GO:GO:0090071
InterPro:Iojap/RsfS/C7orf30	HAMAP:MF_01477	PFAM:PF02410	PANTHER:PTHR21043	PANTHER:PTHR21043:SF1	EnsemblPlantsGene:SORBI_3002G251400
SUPFAM:SSF81301	unigene:Sbi.8449	TIGRFAMs:TIGR00090	UniParc:UPI0001A8430B	RefSeq:XP_002462594.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:63821895..63824317

Molecular Weight (calculated)

24278.6 Da

IEP (calculated)

6.112

GRAVY (calculated)

-0.172

Length

226 amino acids

Sequence
(BLAST)

001: MGGAGGAVPS HGLACAPPAA VTLNPRARRA SPGSGGHWSS PQQPLRSDLL PPPTVACRAR SRSSSSSNVN FGRGDDADKL LEDLLKQHGE VVYSSGGPPS
101: PTVEADDDAE CLSFAVSLAK AASEIKATDI RVLCVKRLVY WTRFFIILTA FSNAQIDAIS SKMRDIGEKQ FSIVASGDTK PNSWTLLDFG DVVVHIFLPQ
201: QRAFYNLEEF YGNATPIELP FDTQLQ

Best Arabidopsis Sequence Match ( AT3G12930.1 )
(BLAST)

001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN

Arabidopsis Description

IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.