Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039355.1-P | Field mustard | plastid | 83.42 | 68.8 |
| CDY24236 | Canola | plastid | 82.9 | 67.51 |
| CDY23554 | Canola | plastid | 76.68 | 62.45 |
| CDY60119 | Canola | plastid | 76.17 | 62.03 |
| AT3G12930.1 | Thale cress | plastid | 75.13 | 60.92 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 60.1 | 52.97 |
| KRH13673 | Soybean | plastid | 64.77 | 52.08 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 59.07 | 51.82 |
| Solyc07g066460.2.1 | Tomato | plastid | 60.1 | 49.79 |
| PGSC0003DMT400056899 | Potato | plastid | 60.1 | 49.79 |
| KRH43792 | Soybean | plastid | 63.73 | 45.56 |
| Os09t0493600-01 | Rice | plastid | 52.33 | 44.89 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 52.33 | 44.49 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 51.3 | 44.0 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 51.3 | 44.0 |
| EER99115 | Sorghum | plastid | 51.3 | 43.81 |
| Zm00001d020971_P002 | Maize | plastid | 50.78 | 41.53 |
Protein Annotations
| EnsemblPlants:CDY43388 | EnsemblPlantsGene:GSBRNA2T00076459001 | Gene3D:3.30.460.10 | HAMAP:MF_01477 | InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 |
| PANTHER:PTHR21043:SF1 | PFAM:PF02410 | ProteinID:CDY43388 | ProteinID:CDY43388.1 | SUPFAM:SSF81301 | TIGRFAMs:TIGR00090 |
| UniParc:UPI0004EDD94A | UniProt:A0A078I2N2 | MapMan:35.1 | : | : | : |
Description
BnaA01g30190DBnaA01g30190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2N2]
Coordinates
chrLK032554:-:154945..159560
Molecular Weight (calculated)
22201.7 Da
IEP (calculated)
5.064
GRAVY (calculated)
-0.063
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHLYVFMYK MVFIIWDFVK KWSKVNLVNF FSVTKNVSED SDEMFDDLFN KYGKVVYKSD DLKSPTAEVD DDAESLAFAV EMAKVASEVK AGDIKVLFVK
101: PLVYWTRFFI IATAFSRPQI DAIGSRMRDM AEKKYGKVAN GDVKPNAWTL LDFGDVVIHL FLPPQRTFYN LEDFYGNAMS VPLPFEDQAP PRS
101: PLVYWTRFFI IATAFSRPQI DAIGSRMRDM AEKKYGKVAN GDVKPNAWTL LDFGDVVIHL FLPPQRTFYN LEDFYGNAMS VPLPFEDQAP PRS
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.