Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99115 | Sorghum | plastid | 87.29 | 91.15 |
| Os09t0493600-01 | Rice | plastid | 67.8 | 71.11 |
| TraesCS5D01G279000.1 | Wheat | mitochondrion, plastid | 65.68 | 68.89 |
| TraesCS5B01G271700.1 | Wheat | mitochondrion, plastid | 64.83 | 68.0 |
| TraesCS5A01G271400.1 | Wheat | mitochondrion, plastid | 64.83 | 67.4 |
| GSMUA_Achr4P09860_001 | Banana | plastid | 51.69 | 55.45 |
| CDY43388 | Canola | extracellular | 41.53 | 50.78 |
| AT3G12930.1 | Thale cress | plastid | 47.46 | 47.06 |
| VIT_19s0027g00700.t01 | Wine grape | plastid | 42.8 | 46.12 |
| KRH13673 | Soybean | plastid | 46.19 | 45.42 |
| Bra039355.1-P | Field mustard | plastid | 44.92 | 45.3 |
| CDY24236 | Canola | plastid | 44.92 | 44.73 |
| PGSC0003DMT400056899 | Potato | plastid | 43.64 | 44.21 |
| Solyc07g066460.2.1 | Tomato | plastid | 43.22 | 43.78 |
| Bra034716.1-P | Field mustard | plastid | 42.8 | 42.62 |
| CDY60119 | Canola | plastid | 42.37 | 42.19 |
| CDY23554 | Canola | plastid | 42.37 | 42.19 |
| KRH43792 | Soybean | plastid | 45.76 | 40.0 |
Protein Annotations
| EnsemblPlants:Zm00001d020971_P002 | EnsemblPlants:Zm00001d020971_T002 | EnsemblPlantsGene:Zm00001d020971 | EntrezGene:542470 | Gene3D:3.30.460.10 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | HAMAP:MF_01477 |
| InterPro:Iojap/RsfS/C7orf30 | PANTHER:PTHR21043 | PANTHER:PTHR21043:SF1 | PFAM:PF02410 | ProteinID:ONM55981.1 | SEG:seg |
| SUPFAM:SSF81301 | TIGRFAMs:TIGR00090 | UniParc:UPI0008449B56 | UniProt:A0A1D6I7E1 | MapMan:35.1 | : |
Description
iojap striping1Protein Iojap%2C chloroplast
Coordinates
chr7:-:138210336..138221164
Molecular Weight (calculated)
25579.2 Da
IEP (calculated)
7.880
GRAVY (calculated)
-0.233
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGTSAAVPS HGLACAPPAA VTLNPRARRR RASSGSGGHR SSPQQPLRSD LLPPATVACR ARSQSASSSN VNFGRGDDAD KLLEDLLKQH GEVVYSSGGP
101: PDPTVEADDD AECLSFAVSL AKAASEIKAT DIRVLCVRRL VYWTRFFIIL TAFSNAQIDA ISSKMRDIGE KQFSKVASGD TKPNSWTLLD FGKSLFSMLC
201: DVVVHIFLPQ QRAFYNLEEF YGNATPIELP FDTQRQ
101: PDPTVEADDD AECLSFAVSL AKAASEIKAT DIRVLCVRRL VYWTRFFIIL TAFSNAQIDA ISSKMRDIGE KQFSKVASGD TKPNSWTLLD FGKSLFSMLC
201: DVVVHIFLPQ QRAFYNLEEF YGNATPIELP FDTQRQ
001: MASSTGLTVA GALLAGDFRL PAVSSLIPRK TSSSLSCLSN RDLSSPYNCC WRLSRGKILT SLSNSRKFAV GKEAEDGFLS NVSEDTDEMF DDLFNKYGKV
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
101: VFRSTDVKSP TAEVDDDAES LAFAVELAKV ASDVKAGDIK VLFVKPLVYW TRFFIIATAF SRPQIDAIGS RMRDLAEKKY GKVANGDVKP NSWTLLDFGD
201: VVIHLFLPPQ RTFYNLEDFY GNAMQIELPF EDQSQPRN
Arabidopsis Description
IJProtein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.