Factsheet for Zm00001d047516_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d013780_P001
Zm00001d014150_P005
Zm00001d018033_P001
Zm00001d028948_P001
Zm00001d033099_P001
Zm00001d033980_P001
Zm00001d037234_P005
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052263_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	Zm00001d013780_P001	AT2G04630.1	21798944
AT3G56270.1	Zm00001d033099_P001	AT2G04630.1	21798944
AT3G56270.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT3G56270.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT3G56270.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT3G56270.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT3G56270.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT3G56270.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT3G56270.1	Zm00001d014150_P005	AT3G01180.1	21798944
AT3G56270.1	Zm00001d018033_P001	AT3G01180.1	21798944
AT3G56270.1	Zm00001d037234_P005	AT3G01180.1	21798944
AT3G56270.1	Zm00001d052263_P001	AT3G01180.1	21798944
AT3G56270.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT3G56270.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT3G56270.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT3G56270.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT3G56270.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92305	Sorghum	nucleus	84.4	84.4
Os03t0339700-01	Rice	nucleus	68.62	68.75
Zm00001d007164_P001	Maize	nucleus	56.15	55.23
GSMUA_Achr8P21300_001	Banana	nucleus	36.51	46.5
GSMUA_Achr3P09860_001	Banana	nucleus	33.95	44.36
KRH65464	Soybean	nucleus	42.39	41.25
KRH76097	Soybean	nucleus	42.2	41.14
KRG94824	Soybean	cytosol	33.58	38.28
KRH00407	Soybean	nucleus	40.0	38.11
PGSC0003DMT400068339	Potato	nucleus	39.27	37.54
KRH40785	Soybean	nucleus	33.21	36.94
Solyc09g042710.2.1	Tomato	nucleus	38.35	36.47
AT3G51720.1	Thale cress	nucleus	26.97	36.12
CDX78029	Canola	nucleus	26.97	35.85
Bra036780.1-P	Field mustard	nucleus	26.79	35.61
CDX73702	Canola	nucleus	26.79	35.35
CDY70507	Canola	cytosol, nucleus, plastid	27.71	34.87
CDY18389	Canola	nucleus	32.11	34.65
Bra017122.1-P	Field mustard	nucleus	31.74	34.12
AT2G38370.2	Thale cress	nucleus	33.58	33.95
CDY65893	Canola	nucleus	30.83	33.87
Bra000057.1-P	Field mustard	nucleus	29.54	32.99
CDY07733	Canola	cytosol	19.63	31.94
CDY07266	Canola	cytosol, mitochondrion	9.36	31.48
CDX93176	Canola	cytosol	22.2	31.35
VIT_13s0067g02400.t01	Wine grape	nucleus	30.64	31.27
CDY04348	Canola	nucleus	15.41	30.43
CDY19552	Canola	mitochondrion	11.01	30.0
Zm00001d010610_P001	Maize	cytosol	30.46	29.8
CDY06986	Canola	cytosol	24.59	29.65
Bra016990.1-P	Field mustard	cytosol	24.59	29.65
PGSC0003DMT400074781	Potato	nucleus	26.97	29.52
Solyc06g050350.2.1	Tomato	nucleus	27.52	28.9
VIT_08s0058g01020.t01	Wine grape	cytosol	44.4	28.78
KRH31225	Soybean	cytosol	29.54	28.75
CDY24901	Canola	cytosol	24.59	28.27
CDY07602	Canola	nucleus	24.4	28.06
Bra000190.1-P	Field mustard	nucleus	24.4	28.06
KRG97647	Soybean	plastid	28.81	28.04
CDY11490	Canola	nucleus	13.39	27.55
CDY58310	Canola	nucleus	13.39	27.55
AT2G40480.1	Thale cress	cytosol	25.32	26.64
KRH73215	Soybean	cytosol	26.97	26.44
KRH14870	Soybean	nucleus	28.44	26.41
AT3G56270.1	Thale cress	cytosol	21.1	25.78
CDX72151	Canola	cytosol	19.82	25.59
CDY70964	Canola	cytosol	7.71	24.14
CDY27228	Canola	cytosol	20.73	23.64
Bra007233.1-P	Field mustard	cytosol	20.0	22.8
Bra007760.1-P	Field mustard	nucleus	13.39	22.74
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	11.01	17.8
Bra039972.1-P	Field mustard	cytosol	7.89	17.2

Protein Annotations

EMBL:BT041631	EMBL:EU969376	EnsemblPlants:Zm00001d047516_P001	EnsemblPlants:Zm00001d047516_T001	EnsemblPlantsGene:Zm00001d047516	EntrezGene:100277584
InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF4	PFAM:PF05701	ProteinID:AQL06814.1
SEG:seg	UniParc:UPI00017B7460	UniProt:B4FWZ3	MapMan:35.1	:	:

Description

WEB family protein

Coordinates

chr9:+:133203896..133206261

Molecular Weight (calculated)

59630.2 Da

IEP (calculated)

5.082

GRAVY (calculated)

-0.588

Length

545 amino acids

Sequence
(BLAST)

001: MSSEAECAAP AAAAPDGAGG GRVEIDTSAP FESVREAVDR FGGSAVWSSD LVRRMFAPSK KHEQSDQAAE AINAEEQAAQ LENELAVKER ETLDVLKELE
101: ATKKIIADLK LKIRKEATET SPEEAADQVS EAGAQQQKPE NTNIDVVVDM EGVEENHSGS VPVDLEQAKA NLNRATCDLA AVRAAVELLR NSIAKEKVLL
201: ERAREKLSSD TSSVSSLEDD LDQTAQKMET LKDLQRRRKD PSDIFVEIKK MTTEVQQLRS MADDSKSEAM VLAAEIEQVK ASICTAEVRC IAARKMEDAA
301: RAAEALALAE IKALVSSGSS FEGDTASDGG GVTLSMEEYF KLCSRALEAD ESSRRKVENA MLQVDAADDS ESESVKRLED ARVEVEECKK ALQEALRRVE
401: AANHGKFAVE EILRRWKSES GHKRRSLGGS PRFKRAAAHR REDSHATDMI SDASDRPPKP TLSIGQILSM KLMGPDGYDK SVWDDKTGEI PEISLGQIIN
501: RSGVLCREDV AARRRISGKR KKFALTGLSV LLAKQSKNKK KRESF

Best Arabidopsis Sequence Match ( AT2G38370.2 )
(BLAST)

001: MVVKTGFPIT DSSSSASMAE FPEPGTVNPD SDLSNGRAEK PEIDTSAPFE SVREAATRFG GFGFWRPSLN KLPDASQENI QEPDIMGLKA QAFELQRELI
101: VKERETLEVL KELEATKATV LKLQQRNEAY EEDTLREEVD SHIKPAGVVL KDLSQAKMNL CKIASIRESV EQLKNKLNEE RAALEKTRER LMEKSLKVFS
201: LEEEEVRVRF AKEGQTGEKD LGMLNEVQRL SRQAQEVKKT GENAELEVVK AMAETESTRD KIRTAKIRLV AARKMKEAAR EAEAVAIAEI EAVTGSMNVG
301: KAEAVTISAE EYSVLARSAR DAEEEARKRV EDAMSRVEEA NVSKKDVLKK VDEAAQEIET SKRVLEEAVE RVDAANASKI EAEEALRKWR SENGQRRRLS
401: SSVNNTSKFK SRRETTTRLM DVNGLHLTYD VVDGSSSSST VPVLKPTMSI GQILSKKLLL AEDSDMNVAN ERRKMSLGQM LAKNSSSDKT VSKRSEGKEN
501: EKRTKTRKRK SFGFAKISVL LNKESKNKKK KKKIALNLR

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.