Factsheet for Zm00001d013780_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006165_P001
Zm00001d018045_P001
Zm00001d018530_P001
Zm00001d031725_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d045735_P002
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04630.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT2G04630.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT2G04630.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT2G04630.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT2G04630.1	Zm00001d018530_P001	AT5G08330.1	21798944
AT2G04630.1	Zm00001d006165_P001	AT5G51910.1	21798944
AT2G04630.1	Zm00001d031725_P001	AT5G51910.1	21798944
AT2G04630.1	Zm00001d045735_P002	AT5G57660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033099_P001	Maize	nucleus	99.3	99.3
TraesCS2D01G175800.1	Wheat	nucleus	92.96	92.96
TraesCS2B01G194500.1	Wheat	nucleus	92.96	92.96
Os03t0586600-01	Rice	nucleus	92.25	92.25
HORVU2Hr1G030940.1	Barley	nucleus	92.25	92.25
GSMUA_Achr4P27190_001	Banana	nucleus	89.44	89.44
GSMUA_Achr3P18200_001	Banana	nucleus	88.03	87.41
VIT_12s0028g01210.t01	Wine grape	nucleus	84.51	85.11
VIT_16s0100g00530.t01	Wine grape	nucleus	83.8	83.8
KXG38092	Sorghum	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	86.62	83.67
KRG91449	Soybean	nucleus	81.69	81.69
AT2G04630.1	Thale cress	nucleus	78.87	77.78
PGSC0003DMT400023048	Potato	nucleus	78.17	77.08
AT5G51940.1	Thale cress	nucleus	78.17	77.08
CDY30836	Canola	nucleus	77.46	76.39
CDY30291	Canola	nucleus	77.46	76.39
Solyc09g010500.2.1	Tomato	nucleus	77.46	76.39
CDY20025	Canola	nucleus	77.46	76.39
CDY00134	Canola	nucleus	77.46	76.39
Bra039057.1-P	Field mustard	nucleus	77.46	76.39
Bra025617.1-P	Field mustard	nucleus	77.46	76.39
KRH35367	Soybean	nucleus	76.06	73.97

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	EntrezGene:100282532	MapMan:15.1.6.4	Gene3D:3.90.940.10	ProteinID:AQK64357.1
ProteinID:AQK64358.1	UniProt:B6SI57	InterPro:DNA-dir_RNA_polK_14-18kDa_CS	EMBL:EU952422	EMBL:EU952931	EMBL:EU957880
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR012293	HAMAP:MF_00192	PFAM:PF01192	PIRSF:PIRSF000778	PIRSF:PIRSF500154
ScanProsite:PS01111	PANTHER:PTHR10773	PANTHER:PTHR10773:SF14	InterPro:Pol_omega/K/RPB6	InterPro:RNAP_RPB6_omega	InterPro:RPB6
InterPro:RPB6/omega_like_sf	InterPro:RpoK/Rpb6	SMART:SM01409	SUPFAM:SSF63562	UniParc:UPI000182B5F2	EnsemblPlantsGene:Zm00001d013780
EnsemblPlants:Zm00001d013780_P001	EnsemblPlants:Zm00001d013780_T001	SEG:seg	:	:	:

Description

DNA-directed RNA polymerases I%2C II%2C and III 14.4 kDa polypeptide

Coordinates

chr5:+:19947087..19950760

Molecular Weight (calculated)

16388.9 Da

IEP (calculated)

3.975

GRAVY (calculated)

-1.147

Length

142 amino acids

Sequence
(BLAST)

001: MADDDYNEID MGYEDEPPEP EIEEGAEEEP ENNEDAPDDV IGGEGEDKEQ EKTKRERKTT KYMTKYERAR ILGTRALQIS MNAPVMVELE GETDPLEIAM
101: KELRARKIPF TIRRYLPDGS YEDWGVDELI VEDSWKRQVG GD

Best Arabidopsis Sequence Match ( AT2G04630.1 )
(BLAST)

001: MADDDYNEVD DLGYEDEPAE PEIEEGVEED ADIKENDDVN VDPLETEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6BDNA-directed RNA polymerases II and V subunit 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.