Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG91449 | Soybean | nucleus | 88.36 | 90.85 |
| VIT_12s0028g01210.t01 | Wine grape | nucleus | 78.77 | 81.56 |
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 77.4 | 79.58 |
| AT5G51940.1 | Thale cress | nucleus | 78.08 | 79.17 |
| GSMUA_Achr4P27190_001 | Banana | nucleus | 76.71 | 78.87 |
| CDY20025 | Canola | nucleus | 77.4 | 78.47 |
| CDY30291 | Canola | nucleus | 77.4 | 78.47 |
| CDY00134 | Canola | nucleus | 77.4 | 78.47 |
| Bra039057.1-P | Field mustard | nucleus | 77.4 | 78.47 |
| GSMUA_Achr3P18200_001 | Banana | nucleus | 76.71 | 78.32 |
| CDY30836 | Canola | nucleus | 76.71 | 77.78 |
| Bra025617.1-P | Field mustard | nucleus | 76.71 | 77.78 |
| AT2G04630.1 | Thale cress | nucleus | 76.03 | 77.08 |
| Zm00001d033099_P001 | Maize | nucleus | 74.66 | 76.76 |
| Os03t0586600-01 | Rice | nucleus | 74.66 | 76.76 |
| Zm00001d013780_P001 | Maize | nucleus | 73.97 | 76.06 |
| Os07t0463100-01 | Rice | nucleus | 73.29 | 75.35 |
| EER96335 | Sorghum | nucleus | 72.6 | 74.13 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 71.23 | 73.24 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 71.23 | 73.24 |
| Solyc09g010500.2.1 | Tomato | nucleus | 71.92 | 72.92 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 70.55 | 72.54 |
| PGSC0003DMT400023048 | Potato | nucleus | 71.23 | 72.22 |
| KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 72.6 | 72.11 |
| Os08t0426000-00 | Rice | nucleus | 36.3 | 17.21 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | EntrezGene:100794926 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | EMBL:ACUP02006668 |
| InterPro:DNA-dir_RNA_polK_14-18kDa_CS | EnsemblPlantsGene:GLYMA_10G238600 | GO:GO:0001054 | GO:GO:0001055 | GO:GO:0001056 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005666 |
| GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006366 |
| GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| UniProt:I1LDU4 | InterPro:IPR012293 | EnsemblPlants:KRH35367 | ProteinID:KRH35367 | ProteinID:KRH35367.1 | HAMAP:MF_00192 |
| PFAM:PF01192 | ScanProsite:PS01111 | PANTHER:PTHR10773 | PANTHER:PTHR10773:SF14 | InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega |
| InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 | SMART:SM01409 | SUPFAM:SSF63562 | UniParc:UPI00023CD49C | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:+:46709414..46712444
Molecular Weight (calculated)
17174.9 Da
IEP (calculated)
4.123
GRAVY (calculated)
-1.056
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSLNGFSWN KGWWCRYEDE PPEPEIEEGA EEDLENKNDE LTGEPIDTED KEEEQPVERP RKTSKYMTKY ERARILGTRA LQISMNAPVM VELEGETDPL
101: EIAMKELRER KIPFTIRRYL PDGSYEDWGV DELIVEDSWK RQVGGD
101: EIAMKELRER KIPFTIRRYL PDGSYEDWGV DELIVEDSWK RQVGGD
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.