Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35393 | Soybean | nucleus | 83.74 | 87.78 |
| CDY27099 | Canola | nucleus | 43.25 | 50.54 |
| AT5G51910.1 | Thale cress | nucleus | 45.4 | 50.51 |
| CDX91612 | Canola | nucleus | 43.56 | 49.31 |
| Bra022568.1-P | Field mustard | cytosol | 43.25 | 47.47 |
| KRH48289 | Soybean | nucleus | 45.4 | 44.18 |
| KRH65181 | Soybean | nucleus | 44.48 | 43.15 |
| KRH03994 | Soybean | nucleus | 44.48 | 42.65 |
| KRH57263 | Soybean | nucleus | 43.87 | 41.33 |
| PGSC0003DMT400062327 | Potato | nucleus | 44.48 | 39.62 |
| Solyc03g006800.1.1 | Tomato | nucleus | 39.26 | 39.26 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.7 | 36.63 |
| KRH32533 | Soybean | plastid | 20.25 | 34.74 |
| KRH19921 | Soybean | plastid | 19.33 | 34.05 |
| KRH30615 | Soybean | cytosol | 16.26 | 33.97 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 33.13 | 33.96 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 19.63 | 33.86 |
| KRG90619 | Soybean | nucleus | 23.93 | 32.23 |
| KRH36141 | Soybean | nucleus | 24.23 | 32.11 |
| KRG89108 | Soybean | nucleus, plastid | 22.7 | 31.9 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 21.47 | 31.82 |
| GSMUA_Achr11P... | Banana | nucleus | 21.47 | 30.97 |
| KRH40904 | Soybean | nucleus | 22.39 | 30.54 |
| KRH40902 | Soybean | nucleus | 22.39 | 30.42 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 27.61 | 30.41 |
| KRH45889 | Soybean | nucleus | 26.38 | 30.07 |
| KRG99108 | Soybean | nucleus | 25.15 | 30.04 |
| Zm00001d031725_P001 | Maize | nucleus | 32.21 | 30.0 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 31.29 | 29.74 |
| OQU80770 | Sorghum | nucleus | 32.52 | 29.53 |
| Os08t0544800-01 | Rice | nucleus | 33.13 | 28.95 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 29.75 | 28.2 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 30.06 | 28.08 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 30.37 | 26.4 |
| KRH49755 | Soybean | nucleus | 15.64 | 25.76 |
| KRG94577 | Soybean | nucleus | 25.46 | 25.15 |
| KRH06094 | Soybean | plastid | 26.69 | 24.1 |
| KRH06910 | Soybean | nucleus | 25.46 | 24.06 |
| EER99208 | Sorghum | nucleus | 23.62 | 23.62 |
| KRH74835 | Soybean | nucleus | 27.3 | 23.12 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 23.93 | 23.08 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 19.33 | 23.08 |
| KRH03466 | Soybean | nucleus | 29.14 | 23.0 |
| KRH56919 | Soybean | nucleus | 29.14 | 22.84 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 23.31 | 22.75 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 23.31 | 22.42 |
| KRH70699 | Soybean | nucleus | 28.53 | 21.93 |
| Zm00001d006165_P001 | Maize | nucleus | 22.09 | 21.82 |
| KRH63357 | Soybean | nucleus | 26.07 | 21.36 |
| KRH54542 | Soybean | nucleus | 26.38 | 21.08 |
| Os09t0521300-00 | Rice | nucleus | 24.54 | 21.0 |
| KRH26343 | Soybean | nucleus, plastid | 27.61 | 20.74 |
Protein Annotations
| EntrezGene:100819475 | MapMan:15.5.19 | EMBL:ACUP02012684 | EnsemblPlantsGene:GLYMA_20G154400 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:K7N3M1 | EnsemblPlants:KRG91429 | ProteinID:KRG91429 | ProteinID:KRG91429.1 |
| ProteinID:KRG91430.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF32 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI000233E360 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:39337308..39339140
Molecular Weight (calculated)
34246.1 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.429
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANPTHDGD DTSETPPPPM VDPSPSPPPQ MKEEVMDAEQ GGDTSLPMTV VPAHLPVSKA AAKRPSKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK
101: SDGETIRWLL EHAEPAIIEA TGTGTIPAIA VSVGGTLKIP TSSAARPEGE VDTPKKRRRR ASNSEFIDVN ENQVSVSSGL APIAQSAYGS GVGGGLVPLW
201: HGNAAASGPF FMFPNASNPP QYWAIPATAA PFFNVQARPI SGFVSALQMQ HDNHHSLNGA ASDSVNSSST VGSTMSTVTV TTSSGSGSAS GSSAATTTQM
301: LRDFSLEIYD KKELQFLGQP PPSSKP
101: SDGETIRWLL EHAEPAIIEA TGTGTIPAIA VSVGGTLKIP TSSAARPEGE VDTPKKRRRR ASNSEFIDVN ENQVSVSSGL APIAQSAYGS GVGGGLVPLW
201: HGNAAASGPF FMFPNASNPP QYWAIPATAA PFFNVQARPI SGFVSALQMQ HDNHHSLNGA ASDSVNSSST VGSTMSTVTV TTSSGSGSAS GSSAATTTQM
301: LRDFSLEIYD KKELQFLGQP PPSSKP
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Arabidopsis Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.