CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG95394
KRH04275
KRH04616
KRH14137
KRH22725
KRH23549
KRH25168
KRH26581
KRH28216
KRH28469
KRH30513
KRH35393
KRH44417
KRH44616
KRH47491
KRH52586
KRH57556
KRH57952
KRH61926
KRH67075
KRH73997
KRH77003
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07840.1	KRH52586	AT1G22920.1	21798944
AT5G07840.1	KRH61926	AT1G22920.1	21798944
AT5G07840.1	KRG95394	AT5G22355.1	21798944
AT5G07840.1	KRH67075	AT5G22355.1	21798944
AT5G61230.1	KRH44616	AT1G51600.1	21798944
AT5G61230.1	KRH14137	AT2G05230.1	21798944
AT5G61230.1	KRH73997	AT2G05230.1	21798944
AT5G61230.1	KRH14137	AT2G05250.1	21798944
AT5G61230.1	KRH73997	AT2G05250.1	21798944
AT5G61230.1	KRH23549	AT3G15660.1	21798944
AT5G61230.1	KRH44417	AT3G15660.1	21798944
AT5G61230.1	KRH47491	AT3G15660.1	21798944
AT5G61230.1	KRH22725	AT3G44720.1	21798944
AT5G61230.1	KRH25168	AT3G44720.1	21798944
AT5G61230.1	KRH26581	AT3G44720.1	21798944
AT5G61230.1	KRH30513	AT3G44720.1	21798944
AT5G61230.1	KRH04275	AT4G17680.1	21798944
AT5G61230.1	KRH28216	AT4G17680.1	21798944
AT5G61230.1	KRH57556	AT4G17680.1	21798944
AT5G61230.1	KRH77271	AT4G17680.1	21798944
AT5G61230.1	KRH04616	AT4G36970.1	21798944
AT5G61230.1	KRH28469	AT4G36970.1	21798944
AT5G61230.1	KRH57952	AT4G36970.1	21798944
AT5G61230.1	KRH77003	AT4G36970.1	21798944
AT5G61230.1	KRG91429	AT5G51910.1	21798944
AT5G61230.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76405	Soybean	cytosol	96.51	96.51
VIT_02s0087g00100.t01	Wine grape	cytosol	72.67	71.84
Solyc08g005910.2.1	Tomato	cytosol	68.6	69.82
PGSC0003DMT400011414	Potato	cytosol	68.6	69.82
Zm00001d014925_P001	Maize	mitochondrion	66.86	69.28
Os02t0102600-01	Rice	cytosol, mitochondrion	66.28	68.67
GSMUA_Achr9P23190_001	Banana	cytosol	68.6	68.6
PGSC0003DMT400075540	Potato	cytosol, mitochondrion	60.47	68.42
HORVU6Hr1G001980.1	Barley	mitochondrion	66.28	68.26
EES06098	Sorghum	cytosol, mitochondrion	65.12	67.88
TraesCS6D01G006600.1	Wheat	cytosol	66.28	67.86
TraesCS6A01G004600.1	Wheat	mitochondrion	66.28	67.46
TraesCS6B01G009600.1	Wheat	mitochondrion	66.28	67.46
TraesCS2B01G597300.1	Wheat	cytosol	65.7	67.26
CDY02163	Canola	cytosol, mitochondrion	65.7	64.57
Bra012976.1-P	Field mustard	cytosol, mitochondrion	65.7	64.57
CDY23077	Canola	cytosol	65.12	63.64
Solyc12g096260.1.1	Tomato	cytosol	46.51	62.5
AT5G61230.1	Thale cress	cytosol, plastid	62.79	62.07
AT5G07840.1	Thale cress	cytosol	62.79	61.71
CDX87205	Canola	cytosol, mitochondrion	66.28	61.29
CDY16818	Canola	cytosol, mitochondrion	66.28	60.32

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100818162	MapMan:35.1	EMBL:ACUP02005955	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EMBL:BT099032	UniProt:C6TMS2	EnsemblPlantsGene:GLYMA_09G215400	GO:GO:0000151	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH39707	ProteinID:KRH39707	ProteinID:KRH39707.1	PFAM:PF13606
PFAM:PF13637	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45189	SMART:SM00248
SUPFAM:SSF48403	UniParc:UPI0001B172BA	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:43897826..43900229

Molecular Weight (calculated)

19321.1 Da

IEP (calculated)

8.243

GRAVY (calculated)

-0.519

Length

172 amino acids

Sequence
(BLAST)

001: MLEEQPVVLF RKSPSRRRLR SAFDTDDRGW TSLHVFARKG ELKLVKKLIN EGMDVNVSAW GPKSKGVTPL HLAAEGGHIG VMDVLLERGA DIDARTKGAC
101: GWTPLHIAAK ERRRDAVKFL LENGAFMPPD ISDSRFNPPL HYCPGLEWAY EEMKRLRQED LSAGETSYSS ES

Best Arabidopsis Sequence Match ( AT5G07840.1 )
(BLAST)

001: MLQEQPVALS FRPNSFRRRS METGVDRDDR GWTQLHIKAR EGDLKAVKEL LDQGADVNAL ACGPKSKGMT PLHLAAKGGH IEVMDLLLER GANMEARTSG
101: ACGWTPLHAA AKERKREAVK FLVGNGAFLP DDITDSRFNP PVQYCHGLEW AYEERKKLSE DTSLSCGDTS CSSAN

Arabidopsis Description

PIA1PIA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UK09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.