Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
24351685
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g096260.1.1 | Tomato | cytosol | 66.45 | 78.91 |
| PGSC0003DMT400011414 | Potato | cytosol | 82.89 | 74.56 |
| GSMUA_Achr9P23190_001 | Banana | cytosol | 72.37 | 63.95 |
| Zm00001d014925_P001 | Maize | mitochondrion | 69.74 | 63.86 |
| EES06098 | Sorghum | cytosol, mitochondrion | 69.08 | 63.64 |
| HORVU6Hr1G001980.1 | Barley | mitochondrion | 68.42 | 62.28 |
| KRH76405 | Soybean | cytosol | 69.74 | 61.63 |
| VIT_02s0087g00100.t01 | Wine grape | cytosol | 70.39 | 61.49 |
| Os02t0102600-01 | Rice | cytosol, mitochondrion | 67.11 | 61.45 |
| TraesCS6D01G006600.1 | Wheat | cytosol | 67.76 | 61.31 |
| TraesCS6B01G009600.1 | Wheat | mitochondrion | 67.76 | 60.95 |
| TraesCS6A01G004600.1 | Wheat | mitochondrion | 67.76 | 60.95 |
| KRH39707 | Soybean | cytosol | 68.42 | 60.47 |
| TraesCS2B01G597300.1 | Wheat | cytosol | 66.45 | 60.12 |
| CDY23077 | Canola | cytosol | 66.45 | 57.39 |
| CDY02163 | Canola | cytosol, mitochondrion | 65.13 | 56.57 |
| Bra012976.1-P | Field mustard | cytosol, mitochondrion | 65.13 | 56.57 |
| AT5G07840.1 | Thale cress | cytosol | 63.82 | 55.43 |
| AT5G61230.1 | Thale cress | cytosol, plastid | 63.16 | 55.17 |
| CDX87205 | Canola | cytosol, mitochondrion | 64.47 | 52.69 |
| CDY16818 | Canola | cytosol, mitochondrion | 64.47 | 51.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075540 | EnsemblPlantsGene:PGSC0003DMG400029376 | Gene3D:1.25.40.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| PANTHER:PTHR45189 | PFAM:PF13637 | PFscan:PS50088 | PFscan:PS50297 | PGSC:PGSC0003DMG400029376 | SMART:SM00248 |
| SUPFAM:SSF48403 | UniParc:UPI000295727C | UniProt:M1CVC5 | MapMan:35.1 | : | : |
Description
Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029376]
Coordinates
chr12:+:58000770..58001411
Molecular Weight (calculated)
16927.4 Da
IEP (calculated)
8.730
GRAVY (calculated)
-0.483
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MQITTGGYMD DRGWTQLHIV ARKGDLKEVK RLLNEGMDAN VTAGGPKTLG VTPLHLAAKG GHVRVMDELL ERGADIDART KGVCGWTPLH HAAKERKRKA
101: IRFLIRNGAF LPDEIHDIRF NPPLHYCPGL EWAYEEMKLL QLESSSSNTS GN
101: IRFLIRNGAF LPDEIHDIRF NPPLHYCPGL EWAYEEMKLL QLESSSSNTS GN
001: MLQEQPVALS FRPNSFRRRS METGVDRDDR GWTQLHIKAR EGDLKAVKEL LDQGADVNAL ACGPKSKGMT PLHLAAKGGH IEVMDLLLER GANMEARTSG
101: ACGWTPLHAA AKERKREAVK FLVGNGAFLP DDITDSRFNP PVQYCHGLEW AYEERKKLSE DTSLSCGDTS CSSAN
101: ACGWTPLHAA AKERKREAVK FLVGNGAFLP DDITDSRFNP PVQYCHGLEW AYEERKKLSE DTSLSCGDTS CSSAN
Arabidopsis Description
PIA1PIA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UK09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.