CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EER88899
EER96348
EER99208
EES00059
EES03295
EES05709
EES07899
EES10633
EES10725
EES10933
EES12336
KXG22639
KXG25311
KXG27287
KXG29961
KXG31173
KXG31737
KXG34016
KXG35763
KXG38894
OQU80770
OQU85000
OQU89582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07840.1	KXG27287	AT1G22920.1	21798944
AT5G07840.1	EES00059	AT3G01340.1	21798944
AT5G07840.1	OQU89582	AT3G01340.1	21798944
AT5G61230.1	EER88899	AT1G51600.1	21798944
AT5G61230.1	EES07899	AT2G05230.1	21798944
AT5G61230.1	EES10633	AT2G05230.1	21798944
AT5G61230.1	EES10933	AT2G05230.1	21798944
AT5G61230.1	KXG34016	AT2G05230.1	21798944
AT5G61230.1	OQU85000	AT2G05230.1	21798944
AT5G61230.1	EES07899	AT2G05250.1	21798944
AT5G61230.1	EES10633	AT2G05250.1	21798944
AT5G61230.1	EES10933	AT2G05250.1	21798944
AT5G61230.1	KXG34016	AT2G05250.1	21798944
AT5G61230.1	OQU85000	AT2G05250.1	21798944
AT5G61230.1	EES12336	AT3G15660.1	21798944
AT5G61230.1	KXG31737	AT3G15660.1	21798944
AT5G61230.1	EER96348	AT3G44720.1	21798944
AT5G61230.1	EES10725	AT3G44720.1	21798944
AT5G61230.1	EER88427	AT4G01090.1	21798944
AT5G61230.1	EES03295	AT4G01090.1	21798944
AT5G61230.1	KXG22639	AT4G01090.1	21798944
AT5G61230.1	KXG29961	AT4G01090.1	21798944
AT5G61230.1	EES05709	AT4G17680.1	21798944
AT5G61230.1	KXG38894	AT4G17680.1	21798944
AT5G61230.1	KXG25311	AT4G36970.1	21798944
AT5G61230.1	KXG31173	AT4G36970.1	21798944
AT5G61230.1	KXG35763	AT4G36970.1	21798944
AT5G61230.1	EER99208	AT5G51910.1	21798944
AT5G61230.1	OQU80770	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014925_P001	Maize	mitochondrion	96.97	96.39
Os02t0102600-01	Rice	cytosol, mitochondrion	87.27	86.75
HORVU6Hr1G001980.1	Barley	mitochondrion	86.06	85.03
TraesCS6D01G006600.1	Wheat	cytosol	85.45	83.93
TraesCS6B01G009600.1	Wheat	mitochondrion	85.45	83.43
TraesCS6A01G004600.1	Wheat	mitochondrion	85.45	83.43
TraesCS2B01G597300.1	Wheat	cytosol	83.64	82.14
PGSC0003DMT400075540	Potato	cytosol, mitochondrion	63.64	69.08
VIT_02s0087g00100.t01	Wine grape	cytosol	72.73	68.97
PGSC0003DMT400011414	Potato	cytosol	68.48	66.86
Solyc08g005910.2.1	Tomato	cytosol	68.48	66.86
GSMUA_Achr9P23190_001	Banana	cytosol	69.7	66.86
KRH39707	Soybean	cytosol	67.88	65.12
KRH76405	Soybean	cytosol	67.88	65.12
Solyc12g096260.1.1	Tomato	cytosol	49.09	63.28
Bra012976.1-P	Field mustard	cytosol, mitochondrion	63.03	59.43
CDY02163	Canola	cytosol, mitochondrion	63.03	59.43
AT5G61230.1	Thale cress	cytosol, plastid	62.42	59.2
CDY23077	Canola	cytosol	63.03	59.09
CDX87205	Canola	cytosol, mitochondrion	61.82	54.84
CDY16818	Canola	cytosol, mitochondrion	61.82	53.97
AT5G07840.1	Thale cress	cytosol	56.97	53.71

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	EntrezGene:8066473	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
UniProt:C5XRH8	EnsemblPlants:EES06098	ProteinID:EES06098	ProteinID:EES06098.1	GO:GO:0000151	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13606	PRINTS:PR01415	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR45189	SMART:SM00248	EnsemblPlantsGene:SORBI_3004G002400	SUPFAM:SSF48403	unigene:Sbi.5262
UniParc:UPI0001A85D9C	RefSeq:XP_002453122.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:187849..190637

Molecular Weight (calculated)

18377.9 Da

IEP (calculated)

7.587

GRAVY (calculated)

-0.644

Length

165 amino acids

Sequence
(BLAST)

001: MVLVRRSLTM SRPRSCHDAD DRGWNPLHVA ARKGDLKEVR RLLDDGMDVN APAWGPKCPG ATPLHLAAQG GHVKIMDELL ERGANIDART KGACGWTPLH
101: IAAKERNKKA VRFLIENGAF LPPEMNDHRF NPPLHYCSGL EWAYEMKRVQ DESDSPGETS LSSDN

Best Arabidopsis Sequence Match ( AT5G61230.1 )
(BLAST)

001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN

Arabidopsis Description

PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.