Factsheet for Bra012976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra011737.1-P
Bra012650.1-P
Bra013179.1-P
Bra014292.1-P
Bra017801.1-P
Bra019468.1-P
Bra021125.1-P
Bra022568.1-P
Bra027220.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61230.1	Bra014292.1-P	AT1G51600.1	21798944
AT5G61230.1	Bra013179.1-P	AT2G05230.1	21798944
AT5G61230.1	Bra013179.1-P	AT2G05250.1	21798944
AT5G61230.1	Bra021125.1-P	AT3G15660.1	21798944
AT5G61230.1	Bra027220.1-P	AT3G15660.1	21798944
AT5G61230.1	Bra019468.1-P	AT3G44720.1	21798944
AT5G61230.1	Bra000943.1-P	AT4G01090.1	21798944
AT5G61230.1	Bra037384.1-P	AT4G01090.1	21798944
AT5G61230.1	Bra012650.1-P	AT4G17680.1	21798944
AT5G61230.1	Bra011737.1-P	AT4G36970.1	21798944
AT5G61230.1	Bra017801.1-P	AT4G36970.1	21798944
AT5G61230.1	Bra022568.1-P	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02163	Canola	cytosol, mitochondrion	100.0	100.0
AT5G61230.1	Thale cress	cytosol, plastid	89.14	89.66
KRH76405	Soybean	cytosol	65.14	66.28
KRH39707	Soybean	cytosol	64.57	65.7
PGSC0003DMT400075540	Potato	cytosol, mitochondrion	56.57	65.13
EES06098	Sorghum	cytosol, mitochondrion	59.43	63.03
Zm00001d014925_P001	Maize	mitochondrion	59.43	62.65
VIT_02s0087g00100.t01	Wine grape	cytosol	61.71	62.07
Os02t0102600-01	Rice	cytosol, mitochondrion	58.29	61.45
HORVU6Hr1G001980.1	Barley	mitochondrion	58.29	61.08
GSMUA_Achr9P23190_001	Banana	cytosol	60.0	61.05
Solyc08g005910.2.1	Tomato	cytosol	58.86	60.95
TraesCS6D01G006600.1	Wheat	cytosol	58.29	60.71
PGSC0003DMT400011414	Potato	cytosol	58.29	60.35
TraesCS6A01G004600.1	Wheat	mitochondrion	58.29	60.35
TraesCS6B01G009600.1	Wheat	mitochondrion	58.29	60.35
Solyc12g096260.1.1	Tomato	cytosol	44.0	60.16
TraesCS2B01G597300.1	Wheat	cytosol	57.14	59.52

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra012976
EnsemblPlants:Bra012976.1	EnsemblPlants:Bra012976.1-P	GO:GO:0000003	GO:GO:0001933	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009553	GO:GO:0009567	GO:GO:0009628	GO:GO:0009644	GO:GO:0009744	GO:GO:0009987
GO:GO:0010218	GO:GO:0010313	GO:GO:0016043	GO:GO:0019538	GO:GO:0031542	GO:GO:0080173
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4D916	PFAM:PF12796	PRINTS:PR01415
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45189	SMART:SM00248	SUPFAM:SSF48403	UniParc:UPI0002540510
SEG:seg	:	:	:	:	:

Description

AT5G61230 (E=7e-066) | ankyrin repeat family protein

Coordinates

chrA03:+:21237401..21237928

Molecular Weight (calculated)

19448.9 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.603

Length

175 amino acids

Sequence
(BLAST)

001: MIQDLPVAFS LRRNSFRRRS PRSNVDDRGW TPLHVKARKG DLKSVKQLLD QGFDVNALAW GPKSKGVTPL HLAAEGGHIE VMDLLLERGA NIDARTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLPDD ISDTRFNPPV HYCHGLEWAY EEMEKLKSES SSSSSGGDTS CSSEN

Best Arabidopsis Sequence Match ( AT5G61230.1 )
(BLAST)

001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN

Arabidopsis Description

PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.