Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G006600.1 | Wheat | cytosol | 99.41 | 100.0 |
| TraesCS6A01G004600.1 | Wheat | mitochondrion | 99.41 | 99.41 |
| HORVU6Hr1G001980.1 | Barley | mitochondrion | 95.86 | 97.01 |
| TraesCS2B01G597300.1 | Wheat | cytosol | 95.27 | 95.83 |
| Zm00001d014925_P001 | Maize | mitochondrion | 85.8 | 87.35 |
| Os02t0102600-01 | Rice | cytosol, mitochondrion | 85.8 | 87.35 |
| EES06098 | Sorghum | cytosol, mitochondrion | 83.43 | 85.45 |
| VIT_02s0087g00100.t01 | Wine grape | cytosol | 70.41 | 68.39 |
| PGSC0003DMT400075540 | Potato | cytosol, mitochondrion | 60.95 | 67.76 |
| KRH39707 | Soybean | cytosol | 67.46 | 66.28 |
| Solyc08g005910.2.1 | Tomato | cytosol | 66.27 | 66.27 |
| PGSC0003DMT400011414 | Potato | cytosol | 66.27 | 66.27 |
| GSMUA_Achr9P23190_001 | Banana | cytosol | 66.86 | 65.7 |
| KRH76405 | Soybean | cytosol | 66.27 | 65.12 |
| Solyc12g096260.1.1 | Tomato | cytosol | 46.75 | 61.72 |
| CDY02163 | Canola | cytosol, mitochondrion | 60.35 | 58.29 |
| Bra012976.1-P | Field mustard | cytosol, mitochondrion | 60.35 | 58.29 |
| AT5G61230.1 | Thale cress | cytosol, plastid | 59.76 | 58.05 |
| CDY23077 | Canola | cytosol | 60.35 | 57.95 |
| CDX87205 | Canola | cytosol, mitochondrion | 60.35 | 54.84 |
| AT5G07840.1 | Thale cress | cytosol | 56.21 | 54.29 |
| CDY16818 | Canola | cytosol, mitochondrion | 60.35 | 53.97 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G009600.1 | EnsemblPlantsGene:TraesCS6B01G009600 | Gene3D:1.25.40.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| PANTHER:PTHR45189 | PFAM:PF12796 | PFscan:PS50088 | PFscan:PS50297 | PRINTS:PR01415 | SEG:seg |
| SMART:SM00248 | SUPFAM:SSF48403 | TIGR:cd00204 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6B:+:6016318..6019159
Molecular Weight (calculated)
18662.0 Da
IEP (calculated)
8.264
GRAVY (calculated)
-0.670
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLRSSLSM TRARARAGDS DDADDRGWNQ LHVAARKGNL KEVRRLLNEG MDVNAPAWGP KSPGATPLHL AAQGGHVKIM DELLERGANI DARTKGACGW
101: TPLHIAAKER NKRVVRFLVE NGAFLPPDLN DHRFNPPLHY CSGLEWAYEM KRMQDESDSG GEASFSSSN
101: TPLHIAAKER NKRVVRFLVE NGAFLPPDLN DHRFNPPLHY CSGLEWAYEM KRMQDESDSG GEASFSSSN
001: MLQEPSAAFS LRRNSFRRRS PRSNVDDRGW NPLHIKARKG DLKSVKQLLD QGMDVNALAW GPKSKGVSAL HLAAEGGHIE VMDLLLERGA NIDAKTWGSC
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
101: GWTPLHAAAK ERKREAVKFL VENGAFLADD ITDTRFNPPV HYCHGLEWAY EEMKKLNSES SSSSGGDTSS SSDN
Arabidopsis Description
PIA2Phytochrome-interacting ankyrin-repeat protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.